CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-pve_contig_114-snap-gene-0.40
(
Pythium vexans
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02319 (E2F_TDP)
IPR003316
maker-pve_contig_114-snap-gene-0.40
T173258_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
e_gw1.38.2.1
M01968_2.00
Physcomitrella patens
NSGCGCBHHN
NDDVGCGCSN
PBM
Weirauch et al.(2014)
pTH5707
0.455
0.455
estExt_gwp_gw1.C_220046
M01225_2.00
Physcomitrella patens
VGCGCBHHNN
NNDDVGCGCB
PBM
Lambert et al.(2019)
pTH9809
0.455
0.455
E2FA
M06871_2.00
Arabidopsis thaliana
NDDDGGCGCCAWWW
WWWTGGCGCCHHHN
Dap-seq
OMalley et al.(2016)
E2FA_col_a
0.455
0.455
E2FA
M06872_2.00
Arabidopsis thaliana
DDWDGGCGCCAWAD
HTWTGGCGCCHWHH
Dap-seq
OMalley et al.(2016)
E2FA_colamp_a
0.455
0.455
E2FA
M08106_2.00
Arabidopsis thaliana
NVGCGCCAHN
NDTGGCGCBN
ChIP-seq
Mathelier et al.(2014)
MA1414.1
0.455
0.455
E2FC
M06870_2.00
Arabidopsis thaliana
AWDDDGGCGCCAAAR
YTTTGGCGCCHHHWT
Dap-seq
OMalley et al.(2016)
E2FC_col_a
0.445
0.445
ENSACAG00000013716
M01960_2.00
Anolis carolinensis
HNVGCGCBND
HNVGCGCBND
PBM
Weirauch et al.(2014)
pTH9221
0.436
0.436
E2F3
M01964_2.00
Taeniopygia guttata
NNSGCGCGMN
NKCGCGCSNN
PBM
Weirauch et al.(2014)
pTH9288
0.436
0.436
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EPrPV00000016015
E2F
76
140
YDSSLGLLTKKFVDLIKSSPTGDLDLNSAAEALGVQKRRIYDITNVLEGIGLIEKTSKNNIHWKY
EPrPV00000016015
E2F
165
224
SYQGMDHLSQAVADLTKEERKYEQHIKSVSQNIQRLYEDEAFDKGSFENLCYITHDDMRR
Links
Other
E2F
family TFs
Other
Pythium vexans
TFs
242 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy