CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NEMVEDRAFT_v1g137233
(
Nematostella vectensis
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02319 (E2F_TDP)
IPR003316
NEMVEDRAFT_v1g137233
T173287_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
E2F2
M01961_2.00
Homo sapiens
DNSGCGCSNH
DNSGCGCSNH
PBM
Weirauch et al.(2014)
pTH9195
0.431
0.431
estExt_gwp_gw1.C_220046
M01225_2.00
Physcomitrella patens
VGCGCBHHNN
NNDDVGCGCB
PBM
Lambert et al.(2019)
pTH9809
0.431
0.431
E2F2
M02949_2.00
Homo sapiens
AAAAATGGCGCCAAAAWD
HWTTTTGGCGCCATTTTT
SELEX
Jolma et al.(2013)
E2F2_1
0.431
0.431
E2F2
M02950_2.00
Homo sapiens
VDTTTTGGCGCCAAAAHN
NDTTTTGGCGCCAAAAHB
SELEX
Jolma et al.(2013)
E2F2_2
0.431
0.431
E2F2
M02951_2.00
Homo sapiens
AAAWWGGCGCCAWTTT
AAAWTGGCGCCWWTTT
SELEX
Jolma et al.(2013)
E2F2_3
0.431
0.431
E2F2
M04696_2.00
Homo sapiens
GCGCGCGCSYW
WRSGCGCGCGC
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_1
0.431
0.431
E2F2
M04697_2.00
Homo sapiens
NDWWDGGCGCCWWHWN
NWDWWGGCGCCHWWHN
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_2
0.431
0.431
efl-1
M08110_2.00
Caenorhabditis elegans
HNHNSGCGSSAAWWN
NWWTTSSCGCSNDND
ChIP-seq
Mathelier et al.(2014)
MA0541.1
0.431
0.431
efl-1
M08197_2.00
Caenorhabditis elegans
BGCGSSAAWW
WWTTSSCGCV
ChIP-seq
Contrino et al.(2012)
Mw140
0.431
0.431
E2F2
M09029_2.00
Homo sapiens
GGCGCGMAWC
GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_HUMAN.H11MO.0.B
0.431
0.431
efl-1
M09526_2.00
Caenorhabditis elegans
WGCAARYGCGCTCYA
TRGAGCGCRYTTGCW
Misc
Heinz et al.(2010)
cElegans-L1-EFL1_modEncode
0.431
0.431
E2F2
M04698_2.00
Homo sapiens
SGBGSGCGCGS
SCGCGCSCVCS
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_1
0.431
0.431
E2F2
M04699_2.00
Homo sapiens
DWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWH
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_2
0.431
0.431
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO31446
E2F
67
135
KDKSLGLLCQRFLAKYPDYPTSDESIEISLDEVAKDLGVERRRIYDIVNVLESVEVISRFAKNRYMWHG
Links
Other
E2F
family TFs
Other
Nematostella vectensis
TFs
218 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy