OS06G0245900 (Oryza sativa)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 OS06G0245900 T173389_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2FE
M01958_2.00
Arabidopsis thaliana
HDSGCGCSHD

HDSGCGCSHD
PBM
Weirauch et al.(2014)
pTH8176
0.787 0.787
E2FE
M06873_2.00
Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN

NHHNWNWWTTTCCCGCCAAAA
Dap-seq
OMalley et al.(2016)
DEL1_col_a
0.787 0.787
E2FE
M06874_2.00
Arabidopsis thaliana
DTTTTGGCGGGAAAA

TTTTCCCGCCAAAAH
Dap-seq
OMalley et al.(2016)
DEL1_colamp_a
0.787 0.787
E2FD
M06875_2.00
Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW

WTTTCCCGCCAAAAHHDWWH
Dap-seq
OMalley et al.(2016)
DEL2_col_a
0.647 0.647
E2FD
M06876_2.00
Arabidopsis thaliana
DTTTTGGCGGGAAAA

TTTTCCCGCCAAAAH
Dap-seq
OMalley et al.(2016)
DEL2_colamp_a
0.647 0.647
E2FD
M10442_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$E2L1_Q2
0.647 0.647
E2FD
M10443_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$E2L_Q2
0.647 0.647
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA

TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.588 0.588
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN

NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.588 0.588
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN

NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.588 0.588
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.581 0.581
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN

NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.581 0.581
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.581 0.581
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.581 0.581
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN

NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.581 0.581
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.581 0.581
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OS06T0245900-01 E2F 58 122
OS06T0245900-01 E2F 204 283

Links

Other E2F family TFs
Other Oryza sativa TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.000
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.000
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.000
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.000
mgf022665m Mimulus guttatus mgf022665m I 0.000
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.000
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.000
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.000
30084.m000185 Ricinus communis 30084.m000185 I 0.000
Pm025326 Prunus mume Pm025326 I 0.000
Pm000004 Prunus mume Pm000004 I 0.000
Cla012318 Citrullus lanatus Cla012318 I 0.000
Ca_08232 Cicer arietinum Ca_08232 I 0.000
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.000
TCM_040015 Theobroma cacao TCM_040015 I 0.000
TCM_025913 Theobroma cacao TCM_025913 I 0.000
TCM_011632 Theobroma cacao TCM_011632 I 0.000
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.000
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.000
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.000
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.000
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.000
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.000
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.000
MDP0000525933 Malus domestica MDP0000525933 I 0.000
MDP0000177547 Malus domestica MDP0000177547 I 0.000
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.000
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.000
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.000
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.000
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.000
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.000
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.000
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.000
Si033237m.g Setaria italica Si033237m.g I 0.000
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.000
OB07G15030 Oryza brachyantha OB07G15030 I 0.000
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.000
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.000
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.000
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.000
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.000
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.000
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.000
Bra020063 Brassica rapa Bra020063 I 0.000
Bra006518 Brassica rapa Bra006518 I 0.000
Bra002262 Brassica rapa Bra002262 I 0.000
Bo9g152440 Brassica oleracea Bo9g152440 I 0.000
Bo3g013830 Brassica oleracea Bo3g013830 I 0.000
Bo2g018360 Brassica oleracea Bo2g018360 I 0.000
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.000
OBART07G06690 Oryza barthii OBART07G06690 I 0.000
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.000
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.000
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.000
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.000
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.000
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.000
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.000
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.000
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.000
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.000
OS07G0204000 Oryza sativa OS07G0204000 I 0.000
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.000
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.000
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.000
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.000
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.000
PGSC0003DMG400008352 Solanum tuberosum PGSC0003DMG400008352 N 0.000
Solyc10g078610.1 Solanum lycopersicum Solyc10g078610.1 N 0.000