DEL (Phaeodactylum tricornutum)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 Phatr3_J48930 T173406_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.455 0.455
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA

TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.455 0.455
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN

NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.455 0.455
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN

NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.455 0.455
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.455 0.455
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.455 0.455
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN

NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.455 0.455
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.455 0.455
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN

NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.455 0.455
E2FE
M01958_2.00
Arabidopsis thaliana
HDSGCGCSHD

HDSGCGCSHD
PBM
Weirauch et al.(2014)
pTH8176
0.440 0.440
E2FE
M06873_2.00
Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN

NHHNWNWWTTTCCCGCCAAAA
Dap-seq
OMalley et al.(2016)
DEL1_col_a
0.440 0.440
E2FE
M06874_2.00
Arabidopsis thaliana
DTTTTGGCGGGAAAA

TTTTCCCGCCAAAAH
Dap-seq
OMalley et al.(2016)
DEL1_colamp_a
0.440 0.440
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J48930.p1 E2F 217 282
Phatr3_J48930.p1 E2F 330 441

Links

Other E2F family TFs
Other Phaeodactylum tricornutum TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_pg.26_#_160 Fragilariopsis cylindrus fgenesh2_pg.26_#_160 I 0.672
PYU1_G013070 Pythium ultimum PYU1_G013070 I 0.515
maker-pve_contig_484-snap-gene-0.19 Pythium vexans maker-pve_contig_484-snap-gene-0.19 I 0.515
maker-piw_contig_1993-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1993-fgenesh-gene-0.1 I 0.515
fgenesh_scip_prom.28083.1342 Phytophthora lateralis fgenesh_scip_prom.28083.1342 I 0.513
ALNC14_032570 Albugo laibachii ALNC14_032570 I 0.507
maker-pir_contig_104-fgenesh-gene-0.11 Pythium irregulare maker-pir_contig_104-fgenesh-gene-0.11 I 0.507
e_gw1.178.5.1 Phytophthora capsici e_gw1.178.5.1 I 0.507
maker-pag1_scaffold_45-snap-gene-0.28 Pythium aphanidermatum maker-pag1_scaffold_45-snap-gene-0.28 I 0.500
Physo156920 Phytophthora sojae Physo156920 I 0.500
F443_02115 Phytophthora parasitica F443_02115 I 0.500
PITG_06416 Phytophthora infestans PITG_06416 I 0.493
TTHERM_01076950 Tetrahymena thermophila TTHERM_01076950 I 0.481
CMT433C Cyanidioschyzon merolae CMT433C I 0.478
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.470
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I 0.470
TTHERM_00721610 Tetrahymena thermophila TTHERM_00721610 I 0.467
Brh_R005316 Buceros rhinoceros Brh_R005316 I 0.463
Cmyd_10011734 Chelonia mydas Cmyd_10011734 I 0.463
Eucgr.I01881 Eucalyptus grandis Eucgr.I01881 I 0.463
ENSPSIG00000012629 Pelodiscus sinensis ENSPSIG00000012629 I 0.463
XP_002942881 Xenopus tropicalis XP_002942881 I 0.456
e2f8.L Xenopus laevis XB-GENE-1219153 I 0.456
Ogr19156 Ophisaurus gracilis Ogr19156 I 0.456
e2f7 Xenopus tropicalis XB-GENE-1018445 I 0.456
E2F7 Echinops telfairi ENSETEG00000014750 I 0.456
Afo_R014077 Aptenodytes forsteri Afo_R014077 I 0.456
Alligator_sinensis_CCG013467.1 Alligator sinensis Alligator_sinensis_CCG013467.1 I 0.456
Tal_R000495 Tyto alba Tal_R000495 I 0.456
Aan_R005623 Calypte anna Aan_R005623 I 0.456
E2F7 Anolis carolinensis ENSACAG00000005414 I 0.456
GUITHDRAFT_133924 Guillardia theta GUITHDRAFT_133924 I 0.455
Gfo_R003976 Geospiza fortis Gfo_R003976 I 0.455
E2f8 Mus musculus ENSMUSG00000046179 I 0.455
E2F8 Pan troglodytes ENSPTRG00000003435 I 0.455
E2F7 Procavia capensis ENSPCAG00000000596 I 0.455
E2f8 Rattus norvegicus ENSRNOG00000022537 I 0.455
ENSBTAP00000022518-D1 Bos grunniens ENSBTAP00000022518-D1 I 0.455
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.455
E2F8 Tursiops truncatus ENSTTRG00000005707 I 0.455
E2F7 Loxodonta africana ENSLAFG00000017902 I 0.455
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.455
Solyc02g087310.2 Solanum lycopersicum Solyc02g087310.2 I 0.455
E2F7 Canis familiaris ENSCAFG00000005718 I 0.455
E2F8 Cavia porcellus ENSCPOG00000013766 I 0.455
E2F8 Bos taurus ENSBTAG00000017446 I 0.455
Cagra.1036s0060 Capsella grandiflora Cagra.1036s0060 I 0.455
ENSBTAP00000023190-D1 Bos grunniens ENSBTAP00000023190-D1 I 0.455
Carubv10001291m.g Capsella rubella Carubv10001291m.g I 0.455
E2F7 Bos taurus ENSBTAG00000016931 I 0.455
E2F8 Erinaceus europaeus ENSEEUG00000011472 I 0.455
ENSFALG00000010433 Ficedula albicollis ENSFALG00000010433 I 0.455
E2F7 Dasypus novemcinctus ENSDNOG00000001580 I 0.455
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.455
Afo_R006642 Aptenodytes forsteri Afo_R006642 I 0.455
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.455
E2F7 Sorex araneus ENSSARG00000004122 I 0.449
ENSSHAG00000018372 Sarcophilus harrisii ENSSHAG00000018372 I 0.449
Tal_R008430 Tyto alba Tal_R008430 I 0.449
E2F7 Pteropus vampyrus ENSPVAG00000000288 I 0.449
E2F7 Pan troglodytes ENSPTRG00000005245 I 0.449
E2F8 Sus scrofa ENSSSCG00000013352 I 0.449
E2F8 Pteropus vampyrus ENSPVAG00000012522 I 0.449
Aan_R006648 Calypte anna Aan_R006648 I 0.449
E2f7 Rattus norvegicus ENSRNOG00000026252 I 0.449
E2F7 Taeniopygia guttata ENSTGUG00000007515 I 0.449
SELMODRAFT_451530 Selaginella moellendorffii SELMODRAFT_451530 I 0.449
ENSP00000323246 Macaca fascicularis ENSP00000323246 I 0.449
Myotis_brandtii_E2F8_10018668 Myotis brandtii Myotis_brandtii_E2F8_10018668 I 0.449
SELMODRAFT_421405 Selaginella moellendorffii SELMODRAFT_421405 I 0.449
ENSP00000379463 Macaca fascicularis ENSP00000379463 I 0.449
Myotis_brandtii_E2F7_10034114 Myotis brandtii Myotis_brandtii_E2F7_10034114 I 0.449
E2F7 Vicugna pacos ENSVPAG00000011151 I 0.449
E2F7 Tursiops truncatus ENSTTRG00000000110 I 0.449
E2F7 Tupaia belangeri ENSTBEG00000005417 I 0.449
ENSSTOG00000008838 Ictidomys tridecemlineatus ENSSTOG00000008838 I 0.449
ENSPPYG00000004791 Pongo abelii ENSPPYG00000004791 I 0.449
ENSTSYG00000007279 Tarsius syrichta ENSTSYG00000007279 I 0.449
ENSTSYG00000008243 Tarsius syrichta ENSTSYG00000008243 I 0.449
ENSSTOG00000007887 Ictidomys tridecemlineatus ENSSTOG00000007887 I 0.449
E2F8 Otolemur garnettii ENSOGAG00000005774 I 0.449
E2F7 Cavia porcellus ENSCPOG00000007375 I 0.449
E2F8 Loxodonta africana ENSLAFG00000022713 I 0.449
ENSPPYG00000003424 Pongo abelii ENSPPYG00000003424 I 0.449
E2F7 Gorilla gorilla ENSGGOG00000012645 I 0.449
E2F7 Callithrix jacchus ENSCJAG00000019162 I 0.449
E2F8 Callithrix jacchus ENSCJAG00000006811 I 0.449
E2F8 Myotis lucifugus ENSMLUG00000015592 I 0.449
E2F7 Myotis lucifugus ENSMLUG00000012116 I 0.449
Bostr.1460s0076 Boechera stricta Bostr.1460s0076 I 0.449
ENSCSAG00000003998 Chlorocebus sabaeus ENSCSAG00000003998 I 0.449
ENSCSAG00000005093 Chlorocebus sabaeus ENSCSAG00000005093 I 0.449
ENSECAG00000017963 Equus caballus ENSECAG00000017963 I 0.449
E2F8 Dasypus novemcinctus ENSDNOG00000003349 I 0.449
ENSDORG00000003404 Dipodomys ordii ENSDORG00000003404 I 0.449
E2F8 Felis catus ENSFCAG00000010706 I 0.449
E2F7 Felis catus ENSFCAG00000010756 I 0.449
ENSGALG00000004023 Gallus gallus ENSGALG00000004023 I 0.449
E2F7 Homo sapiens ENSG00000165891 D 0.449
E2F8 Homo sapiens ENSG00000129173 D 0.449
E2F8 Macaca mulatta ENSMMUG00000010853 I 0.449
E2F7 Macaca mulatta ENSMMUG00000022846 I 0.449
E2F8 Oryctolagus cuniculus ENSOCUG00000004485 I 0.449
ENSAMEG00000017950 Ailuropoda melanoleuca ENSAMEG00000017950 I 0.449
E2f8 Dipodomys ordii ENSDORG00000000040 I 0.449
ENSAMEG00000007247 Ailuropoda melanoleuca ENSAMEG00000007247 I 0.449
E2F7 Otolemur garnettii ENSOGAG00000010821 I 0.449
ENSPANG00000005225 Papio anubis ENSPANG00000005225 I 0.449
ENSPANG00000004929 Papio anubis ENSPANG00000004929 I 0.449
E2F7 Ochotona princeps ENSOPRG00000001896 I 0.449
ENSAPLG00000014506 Anas platyrhynchos ENSAPLG00000014506 I 0.449
ENSOARG00000008807 Ovis aries ENSOARG00000008807 I 0.449
ENSNLEG00000017803 Nomascus leucogenys ENSNLEG00000017803 I 0.449
E2F8 Canis familiaris ENSCAFG00000009431 I 0.449
E2F8 Monodelphis domestica ENSMODG00000009029 I 0.449
ENSMPUG00000017468 Mustela putorius furo ENSMPUG00000017468 I 0.449
ENSMPUG00000013899 Mustela putorius furo ENSMPUG00000013899 I 0.449
ENSNLEG00000004897 Nomascus leucogenys ENSNLEG00000004897 I 0.449
E2f7 Mus musculus ENSMUSG00000020185 D 0.449
Cmyd_10016427 Chelonia mydas Cmyd_10016427 I 0.448
Brh_R011115 Buceros rhinoceros Brh_R011115 I 0.448
Thhalv10021032m.g Eutrema salsugineum Thhalv10021032m.g I 0.448
TCM_017926 Theobroma cacao TCM_017926 I 0.448
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I 0.448
E2F7 Monodelphis domestica ENSMODG00000020465 I 0.448
E2F7 Meleagris gallopavo ENSMGAG00000010943 I 0.448
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.448
ENSORLG00000012301 Oryzias latipes ENSORLG00000012301 I 0.448
ENSPSIG00000008707 Pelodiscus sinensis ENSPSIG00000008707 I 0.448
ENSMEUG00000008461 Macropus eugenii ENSMEUG00000008461 I 0.448
E2F8 Ornithorhynchus anatinus ENSOANG00000011290 I 0.448
ENSLOCG00000004831 Lepisosteus oculatus ENSLOCG00000004831 I 0.448
ENSGALG00000010265 Gallus gallus ENSGALG00000010265 I 0.448
LotgiG168338 Lottia gigantea LotgiG168338 I 0.448
Pvit_06409 Pogona vitticeps Pvit_06409 I 0.448
Contig4079.0.g2 Oxytricha trifallax Contig4079.0.g2 I 0.444
Contig5499.0.g79 Oxytricha trifallax Contig5499.0.g79 I 0.444
E2F8 Procavia capensis ENSPCAG00000003996 I 0.442
Carubv10014041m.g Capsella rubella Carubv10014041m.g I 0.441
fgenesh2_pg.scaffold_132000019 Physcomitrella patens fgenesh2_pg.scaffold_132000019 I 0.441
EuGene.0000050713 Micromonas pusilla EuGene.0000050713 I 0.441
fgenesh1_pg.scaffold_172000049 Physcomitrella patens fgenesh1_pg.scaffold_172000049 I 0.441
EuGene.0800010516 Micromonas sp RCC299 EuGene.0800010516 I 0.441
E2F7 Sus scrofa ENSSSCG00000000950 I 0.441
CGI_10023548 Crassostrea gigas CGI_10023548 I 0.441
E2F8 Choloepus hoffmanni ENSCHOG00000006322 I 0.441
ENSAPLG00000009091 Anas platyrhynchos ENSAPLG00000009091 I 0.441
gw1.8.144.1 Ostreococcus RCC809 gw1.8.144.1 I 0.440
E2FE Arabidopsis thaliana AT3G48160 D 0.440
ENSSHAG00000002919 Sarcophilus harrisii ENSSHAG00000002919 I 0.440
Aquca_025_00187 Aquilegia coerulea Aquca_025_00187 I 0.440
ENSLOCG00000016279 Lepisosteus oculatus ENSLOCG00000016279 I 0.440
GLYMA06G19843 Glycine max GLYMA06G19843 I 0.440
ISCW021939 Ixodes scapularis ISCW021939 I 0.440
GRMZM2G378665 Zea mays GRMZM2G378665 I 0.440
TCM_011971 Theobroma cacao TCM_011971 I 0.440
Bostr.2902s0230 Boechera stricta Bostr.2902s0230 I 0.440
ENSOARG00000014941 Ovis aries ENSOARG00000014941 I 0.438
Phyra77344 Phytophthora ramorum Phyra77344 I 0.437
Bra018080 Brassica rapa Bra018080 I 0.434
Thhalv10013977m.g Eutrema salsugineum Thhalv10013977m.g I 0.434
gene03312-v1.0-hybrid Fragaria vesca gene03312-v1.0-hybrid I 0.434
Gorai.006G027400 Gossypium raimondii Gorai.006G027400 I 0.434
Bra039127 Brassica rapa Bra039127 I 0.434
Bo8g076700 Brassica oleracea Bo8g076700 I 0.434
Bra023497 Brassica rapa Bra023497 I 0.434
Bo5g155250 Brassica oleracea Bo5g155250 I 0.434
0800010288 Ostreococcus tauri 0800010288 I 0.434
E2FF Arabidopsis thaliana AT3G01330 I 0.434
Bo2g012280 Brassica oleracea Bo2g012280 I 0.434
E2F8 Equus caballus ENSECAG00000016457 I 0.434
Gorai.004G114000 Gossypium raimondii Gorai.004G114000 I 0.434
DEL2 Arabidopsis lyrata Al_scaffold_0006_1397 I 0.433
ENSAMXG00000016864 Astyanax mexicanus ENSAMXG00000016864 I 0.433
cassava22158.valid.m1 Manihot esculenta cassava22158.valid.m1 I 0.433
ENSLACG00000016113 Latimeria chalumnae ENSLACG00000016113 I 0.433
E2F8 Taeniopygia guttata ENSTGUG00000015857 I 0.433
GLYMA04G34870 Glycine max GLYMA04G34870 I 0.433
GSPATT00002803001 Paramecium tetraurelia GSPATT00002803001 I 0.433
evm.TU.supercontig_14.76 Carica papaya evm.TU.supercontig_14.76 I 0.433
Gfo_R003950 Geospiza fortis Gfo_R003950 I 0.433
Ciclev10018041m.g Citrus clementina Ciclev10018041m.g I 0.433
E2F8 Anolis carolinensis ENSACAG00000015743 I 0.433
SPU_023346 Strongylocentrotus purpuratus SPU_023346 I 0.433
GSPATT00001226001 Paramecium tetraurelia GSPATT00001226001 I 0.430
Contig13804.0.g1 Oxytricha trifallax Contig13804.0.g1 I 0.429
Contig14878.0.g72 Oxytricha trifallax Contig14878.0.g72 I 0.429