Thaps3973 (Thalassiosira pseudonana)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 Thaps3973 T173520_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA

TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.478 0.478
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN

NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.478 0.478
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN

NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.478 0.478
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.456 0.456
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN

NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.456 0.456
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.456 0.456
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.456 0.456
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN

NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.456 0.456
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.456 0.456
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thaps3973 E2F 220 292
Thaps3973 E2F 326 436

Links

Other E2F family TFs
Other Thalassiosira pseudonana TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30147.m014015 Ricinus communis 30147.m014015 I 0.434
Aan_R005623 Calypte anna Aan_R005623 I 0.463
Aan_R006648 Calypte anna Aan_R006648 I 0.471
Afo_R006642 Aptenodytes forsteri Afo_R006642 I 0.471
Afo_R014077 Aptenodytes forsteri Afo_R014077 I 0.463
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.463
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.463
Alligator_sinensis_CCG013467.1 Alligator sinensis Alligator_sinensis_CCG013467.1 I 0.463
ALNC14_032570 Albugo laibachii ALNC14_032570 I 0.471
BGIOSGA005653 Oryza indica BGIOSGA005653 I 0.441
BRADI1G44520 Brachypodium distachyon BRADI1G44520 I 0.434
Brh_R005316 Buceros rhinoceros Brh_R005316 I 0.463
Brh_R011115 Buceros rhinoceros Brh_R011115 I 0.471
CapteG198117 Capitella teleta CapteG198117 I 0.449
CGI_10023548 Crassostrea gigas CGI_10023548 I 0.441
chr4.LjT30K03.50.nc Lotus japonicus chr4.LjT30K03.50.nc I 0.434
CMT433C Cyanidioschyzon merolae CMT433C I 0.485
Cmyd_10011734 Chelonia mydas Cmyd_10011734 I 0.471
Cmyd_10016427 Chelonia mydas Cmyd_10016427 I 0.471
Contig4079.0.g2 Oxytricha trifallax Contig4079.0.g2 I 0.463
Contig5499.0.g79 Oxytricha trifallax Contig5499.0.g79 I 0.463
E2F7 Procavia capensis ENSPCAG00000000596 I 0.456
E2F7 Loxodonta africana ENSLAFG00000017902 I 0.456
E2F7 Sorex araneus ENSSARG00000004122 I 0.456
E2F7 Tupaia belangeri ENSTBEG00000005417 I 0.456
E2F7 Sus scrofa ENSSSCG00000000950 I 0.441
e2f7 Gasterosteus aculeatus ENSGACG00000019468 I 0.471
E2F7 Gorilla gorilla ENSGGOG00000012645 I 0.456
E2f7 Rattus norvegicus ENSRNOG00000026252 I 0.456
E2F7 Pteropus vampyrus ENSPVAG00000000288 I 0.456
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.456
E2F7 Otolemur garnettii ENSOGAG00000010821 I 0.456
E2f7 Mus musculus ENSMUSG00000020185 D 0.456
E2F7 Ochotona princeps ENSOPRG00000001896 I 0.456
E2F7 Monodelphis domestica ENSMODG00000020465 I 0.456
E2F7 Macaca mulatta ENSMMUG00000022846 I 0.456
E2F7 Pan troglodytes ENSPTRG00000005245 I 0.456
E2F7 Myotis lucifugus ENSMLUG00000012116 I 0.463
E2F7 Meleagris gallopavo ENSMGAG00000010943 I 0.456
E2F7 Taeniopygia guttata ENSTGUG00000007515 I 0.471
E2F7 Homo sapiens ENSG00000165891 D 0.456
E2F7 Dasypus novemcinctus ENSDNOG00000001580 I 0.456
E2F7 Callithrix jacchus ENSCJAG00000019162 I 0.456
e2f7 Danio rerio ENSDARG00000008986 I 0.471
E2F7 Vicugna pacos ENSVPAG00000011151 I 0.456
E2F7 Canis familiaris ENSCAFG00000005718 I 0.456
E2F7 Bos taurus ENSBTAG00000016931 I 0.456
E2F7 Tursiops truncatus ENSTTRG00000000110 I 0.456
e2f7 Xenopus tropicalis XB-GENE-1018445 I 0.463
E2F7 Cavia porcellus ENSCPOG00000007375 I 0.456
E2F7 Felis catus ENSFCAG00000010756 I 0.456
e2f7 Tetraodon nigroviridis ENSTNIG00000005126 I 0.441
E2F7 Anolis carolinensis ENSACAG00000005414 I 0.471
e2f7 Takifugu rubripes ENSTRUG00000001843 I 0.463
E2F7 Echinops telfairi ENSETEG00000014750 I 0.441
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.463
e2f8 Oryzias latipes ENSORLG00000000786 I 0.471
E2F8 Sus scrofa ENSSSCG00000013352 I 0.478
E2F8 Otolemur garnettii ENSOGAG00000005774 I 0.471
E2F8 Procavia capensis ENSPCAG00000003996 I 0.473
E2F8 Pan troglodytes ENSPTRG00000003435 I 0.478
E2F8 Canis familiaris ENSCAFG00000009431 I 0.478
E2F8 Taeniopygia guttata ENSTGUG00000015857 I 0.456
E2F8 Pteropus vampyrus ENSPVAG00000012522 I 0.478
E2f8 Rattus norvegicus ENSRNOG00000022537 I 0.471
E2F8 Tursiops truncatus ENSTTRG00000005707 I 0.485
e2f8 Takifugu rubripes ENSTRUG00000015792 I 0.471
e2f8 Tetraodon nigroviridis ENSTNIG00000009615 I 0.471
E2F8 Oryctolagus cuniculus ENSOCUG00000004485 I 0.478
e2f8 Gasterosteus aculeatus ENSGACG00000017086 I 0.471
E2F8 Anolis carolinensis ENSACAG00000015743 I 0.478
e2f8 Danio rerio ENSDARG00000057323 I 0.485
E2F8 Dasypus novemcinctus ENSDNOG00000003349 I 0.478
E2F8 Macaca mulatta ENSMMUG00000010853 I 0.478
E2F8 Myotis lucifugus ENSMLUG00000015592 I 0.478
E2F8 Meleagris gallopavo ENSMGAG00000002303 I 0.441
E2F8 Erinaceus europaeus ENSEEUG00000011472 I 0.478
E2f8 Dipodomys ordii ENSDORG00000000040 I 0.485
E2F8 Equus caballus ENSECAG00000016457 I 0.478
E2F8 Felis catus ENSFCAG00000010706 I 0.478
E2F8 Homo sapiens ENSG00000129173 D 0.478
E2F8 Monodelphis domestica ENSMODG00000009029 I 0.478
E2F8 Cavia porcellus ENSCPOG00000013766 I 0.471
E2F8 Callithrix jacchus ENSCJAG00000006811 I 0.478
E2F8 Ornithorhynchus anatinus ENSOANG00000011290 I 0.478
E2F8 Loxodonta africana ENSLAFG00000022713 I 0.478
E2f8 Mus musculus ENSMUSG00000046179 I 0.471
E2F8 Bos taurus ENSBTAG00000017446 I 0.478
E2F8 Choloepus hoffmanni ENSCHOG00000006322 I 0.478
e2f8.L Xenopus laevis XB-GENE-1219153 I 0.463
ENSAMEG00000007247 Ailuropoda melanoleuca ENSAMEG00000007247 I 0.456
ENSAMEG00000017950 Ailuropoda melanoleuca ENSAMEG00000017950 I 0.478
ENSAMXG00000016864 Astyanax mexicanus ENSAMXG00000016864 I 0.471
ENSAPLG00000009091 Anas platyrhynchos ENSAPLG00000009091 I 0.463
ENSAPLG00000014506 Anas platyrhynchos ENSAPLG00000014506 I 0.456
ENSBTAP00000022518-D1 Bos grunniens ENSBTAP00000022518-D1 I 0.456
ENSBTAP00000023190-D1 Bos grunniens ENSBTAP00000023190-D1 I 0.478
ENSCING00000014484 Ciona intestinalis ENSCING00000014484 I 0.434
ENSCSAG00000003998 Chlorocebus sabaeus ENSCSAG00000003998 I 0.456
ENSCSAG00000005093 Chlorocebus sabaeus ENSCSAG00000005093 I 0.478
ENSDORG00000003404 Dipodomys ordii ENSDORG00000003404 I 0.456
ENSECAG00000017963 Equus caballus ENSECAG00000017963 I 0.456
ENSFALG00000001625 Ficedula albicollis ENSFALG00000001625 I 0.456
ENSFALG00000010433 Ficedula albicollis ENSFALG00000010433 I 0.471
ENSGALG00000004023 Gallus gallus ENSGALG00000004023 I 0.463
ENSGALG00000010265 Gallus gallus ENSGALG00000010265 I 0.456
ENSGMOG00000019253 Gadus morhua ENSGMOG00000019253 I 0.463
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I 0.478
ENSLACG00000016113 Latimeria chalumnae ENSLACG00000016113 I 0.463
ENSLOCG00000004831 Lepisosteus oculatus ENSLOCG00000004831 I 0.471
ENSLOCG00000016279 Lepisosteus oculatus ENSLOCG00000016279 I 0.478
ENSMEUG00000008461 Macropus eugenii ENSMEUG00000008461 I 0.456
ENSMPUG00000013899 Mustela putorius furo ENSMPUG00000013899 I 0.478
ENSMPUG00000017468 Mustela putorius furo ENSMPUG00000017468 I 0.456
ENSNLEG00000004897 Nomascus leucogenys ENSNLEG00000004897 I 0.456
ENSNLEG00000017803 Nomascus leucogenys ENSNLEG00000017803 I 0.478
ENSOARG00000008807 Ovis aries ENSOARG00000008807 I 0.478
ENSOARG00000014941 Ovis aries ENSOARG00000014941 I 0.456
ENSONIG00000007135 Oreochromis niloticus ENSONIG00000007135 I 0.471
ENSONIG00000012070 Oreochromis niloticus ENSONIG00000012070 I 0.463
ENSORLG00000012301 Oryzias latipes ENSORLG00000012301 I 0.471
ENSP00000323246 Macaca fascicularis ENSP00000323246 I 0.456
ENSP00000379463 Macaca fascicularis ENSP00000379463 I 0.478
ENSPANG00000004929 Papio anubis ENSPANG00000004929 I 0.456
ENSPANG00000005225 Papio anubis ENSPANG00000005225 I 0.478
ENSPFOG00000003272 Poecilia formosa ENSPFOG00000003272 I 0.493
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I 0.463
ENSPPYG00000003424 Pongo abelii ENSPPYG00000003424 I 0.478
ENSPPYG00000004791 Pongo abelii ENSPPYG00000004791 I 0.456
ENSPSIG00000008707 Pelodiscus sinensis ENSPSIG00000008707 I 0.471
ENSPSIG00000012629 Pelodiscus sinensis ENSPSIG00000012629 I 0.478
ENSSHAG00000002919 Sarcophilus harrisii ENSSHAG00000002919 I 0.456
ENSSHAG00000018372 Sarcophilus harrisii ENSSHAG00000018372 I 0.478
ENSSTOG00000007887 Ictidomys tridecemlineatus ENSSTOG00000007887 I 0.456
ENSSTOG00000008838 Ictidomys tridecemlineatus ENSSTOG00000008838 I 0.471
ENSTSYG00000007279 Tarsius syrichta ENSTSYG00000007279 I 0.478
ENSTSYG00000008243 Tarsius syrichta ENSTSYG00000008243 I 0.456
ENSXMAG00000006252 Xiphophorus maculatus ENSXMAG00000006252 I 0.500
ENSXMAG00000010237 Xiphophorus maculatus ENSXMAG00000010237 I 0.463
Eucgr.I01881 Eucalyptus grandis Eucgr.I01881 I 0.456
EuGene.0000050713 Micromonas pusilla EuGene.0000050713 I 0.478
EuGene.0800010516 Micromonas sp RCC299 EuGene.0800010516 I 0.471
e_gw1.178.5.1 Phytophthora capsici e_gw1.178.5.1 I 0.463
F443_02115 Phytophthora parasitica F443_02115 I 0.463
F775_06335 Aegilops tauschii F775_06335 I 0.441
F775_15908 Aegilops tauschii F775_15908 I 0.434
fgenesh1_pg.scaffold_172000049 Physcomitrella patens fgenesh1_pg.scaffold_172000049 I 0.478
fgenesh2_pg.scaffold_132000019 Physcomitrella patens fgenesh2_pg.scaffold_132000019 I 0.471
fgenesh_scip_prom.28083.1342 Phytophthora lateralis fgenesh_scip_prom.28083.1342 I 0.454
gene03312-v1.0-hybrid Fragaria vesca gene03312-v1.0-hybrid I 0.441
Gfo_R003950 Geospiza fortis Gfo_R003950 I 0.456
Gfo_R003976 Geospiza fortis Gfo_R003976 I 0.471
GRMZM2G060000 Zea mays GRMZM2G060000 I 0.441
GRMZM2G361659 Zea mays GRMZM2G361659 I 0.449
GRMZM2G378665 Zea mays GRMZM2G378665 I 0.449
GSMUA_Achr10G29600_001 Musa acuminata GSMUA_Achr10G29600_001 I 0.449
gw.270.22.1 Branchiostoma floridae gw.270.22.1 I 0.435
gw1.8.144.1 Ostreococcus RCC809 gw1.8.144.1 I 0.434
LotgiG168338 Lottia gigantea LotgiG168338 I 0.441
LPERR02G26130 Leersia perrieri LPERR02G26130 I 0.441
LPERR06G08240 Leersia perrieri LPERR06G08240 I 0.441
maker-pag1_scaffold_45-snap-gene-0.28 Pythium aphanidermatum maker-pag1_scaffold_45-snap-gene-0.28 I 0.449
maker-pir_contig_104-fgenesh-gene-0.11 Pythium irregulare maker-pir_contig_104-fgenesh-gene-0.11 I 0.449
maker-piw_contig_1993-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1993-fgenesh-gene-0.1 I 0.463
maker-pve_contig_484-snap-gene-0.19 Pythium vexans maker-pve_contig_484-snap-gene-0.19 I 0.449
mgf007657m Mimulus guttatus mgf007657m I 0.434
MLOC_67050 Hordeum vulgare MLOC_67050 I 0.434
Myotis_brandtii_E2F7_10034114 Myotis brandtii Myotis_brandtii_E2F7_10034114 I 0.463
Myotis_brandtii_E2F8_10018668 Myotis brandtii Myotis_brandtii_E2F8_10018668 I 0.478
OB02G38920 Oryza brachyantha OB02G38920 I 0.434
OBART02G31930 Oryza barthii OBART02G31930 I 0.441
Ocbimv22037571m.g Octopus bimaculoides Ocbimv22037571m.g I 0.471
Ogr19156 Ophisaurus gracilis Ogr19156 I 0.471
OLONG_014374 Oryza longistaminata OLONG_014374 I 0.441
OMERI02G30620 Oryza meridionalis OMERI02G30620 I 0.441
ONIVA06G05110 Oryza nivara ONIVA06G05110 I 0.441
OPUNC02G29630 Oryza punctata OPUNC02G29630 I 0.441
ORGLA02G0274600 Oryza glaberrima ORGLA02G0274600 I 0.441
ORUFI02G33610 Oryza rufipogon ORUFI02G33610 I 0.441
OS02G0739700 Oryza sativa OS02G0739700 I 0.441
OSTLU_42726 Ostreococcus lucimarinus OSTLU_42726 I 0.463
Pavir.Db01700 Panicum virgatum Pavir.Db01700 I 0.441
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.456
Physo156920 Phytophthora sojae Physo156920 I 0.471
PITG_06416 Phytophthora infestans PITG_06416 I 0.441
Pvit_06409 Pogona vitticeps Pvit_06409 I 0.471
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.478
PYU1_G013070 Pythium ultimum PYU1_G013070 I 0.449
Sakowv30003251m.g Saccoglossus kowalevskii Sakowv30003251m.g I 0.456
Sb04g028440 Sorghum bicolor Sb04g028440 I 0.449
Sb10g008800 Sorghum bicolor Sb10g008800 I 0.441
SELMODRAFT_421405 Selaginella moellendorffii SELMODRAFT_421405 I 0.434
SELMODRAFT_451530 Selaginella moellendorffii SELMODRAFT_451530 I 0.434
Si006412m.g Setaria italica Si006412m.g I 0.441
Si019635m.g Setaria italica Si019635m.g I 0.449
Solyc02g087310.2 Solanum lycopersicum Solyc02g087310.2 I 0.456
SPU_023346 Strongylocentrotus purpuratus SPU_023346 I 0.456
SVUK_0001371201 Strongylus vulgaris SVUK_0001371201 I 0.433
Tal_R000495 Tyto alba Tal_R000495 I 0.463
Tal_R008430 Tyto alba Tal_R008430 I 0.471
VIT_14s0066g02370 Vitis vinifera VIT_14s0066g02370 I 0.441
XP_002942881 Xenopus tropicalis XP_002942881 I 0.463