fgenesh2_pg.scaffold_288000044 (Branchiostoma floridae)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 fgenesh2_pg.scaffold_288000044 T173844_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.646 0.646
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA

TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.646 0.646
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN

NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.646 0.646
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN

NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.646 0.646
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.646 0.646
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.646 0.646
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN

NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.646 0.646
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.646 0.646
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN

NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.646 0.646
E2FE
M01958_2.00
Arabidopsis thaliana
HDSGCGCSHD

HDSGCGCSHD
PBM
Weirauch et al.(2014)
pTH8176
0.515 0.515
E2FE
M06873_2.00
Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN

NHHNWNWWTTTCCCGCCAAAA
Dap-seq
OMalley et al.(2016)
DEL1_col_a
0.515 0.515
E2FE
M06874_2.00
Arabidopsis thaliana
DTTTTGGCGGGAAAA

TTTTCCCGCCAAAAH
Dap-seq
OMalley et al.(2016)
DEL1_colamp_a
0.515 0.515
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_288000044 E2F 224 253
fgenesh2_pg.scaffold_288000044 E2F 256 341

Links

Other E2F family TFs
Other Branchiostoma floridae TFs

Invalid Input OrderBy

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action