Ocbimv22032617m.g (Octopus bimaculoides)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Ocbimv22032617m.g T173874_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2F4
M02961_2.00
Homo sapiens
AATGGCGCCAAA

TTTGGCGCCATT
SELEX
Jolma et al.(2013)
E2F4_1
0.985 0.985
E2F4
M02962_2.00
Homo sapiens
TTTGGCGCCAAA

TTTGGCGCCAAA
SELEX
Jolma et al.(2013)
E2F4_2
0.985 0.985
E2F4
M04707_2.00
Homo sapiens
NWWKGGCGCCAAAW

WTTTGGCGCCMWWN
SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX
0.985 0.985
E2F4
M08109_2.00
Homo sapiens
NSGCGGGARVN

NBYTCCCGCSN
ChIP-seq
Mathelier et al.(2014)
MA0470.1
0.985 0.985
E2F4
M07942_2.00
Homo sapiens
SGCGSGARDNNBNVN

NBNVNNHYTCSCGCS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD
0.985 0.985
E2F4
M07943_2.00
Homo sapiens
SGCGGGARDNNBVVN

NBBVNNHYTCCCGCS
ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD
0.985 0.985
E2F4
M09036_2.00
Homo sapiens
VDRGGCGGGRVND

HNBYCCCGCCYHB
Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A
0.985 0.985
E2f4
M09037_2.00
Mus musculus
NRDDGGCGGGRMNN

NNKYCCCGCCHHYN
Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A
0.985 0.985
E2F4
M09524_2.00
Homo sapiens
VGCGSGAADH

DHTTCSCGCB
Misc
Heinz et al.(2010)
K562-E2F4_GSE31477
0.985 0.985
E2F4
M10457_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_05
0.985 0.985
E2F4
M10458_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q3
0.985 0.985
E2F4
M10459_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q6
0.985 0.985
E2f5
M09042_2.00
Mus musculus
NGCGCSAAAN

NTTTSGCGCN
Misc
Kulakovskiy et al.(2013)
E2F5_MOUSE.H11MO.0.B
0.954 0.954
e_gw1.38.2.1
M01968_2.00
Physcomitrella patens
NSGCGCBHHN

NDDVGCGCSN
PBM
Weirauch et al.(2014)
pTH5707
0.754 0.754
estExt_gwp_gw1.C_220046
M01225_2.00
Physcomitrella patens
VGCGCBHHNN

NNDDVGCGCB
PBM
Lambert et al.(2019)
pTH9809
0.754 0.754
ENSACAG00000013716
M01960_2.00
Anolis carolinensis
HNVGCGCBND

HNVGCGCBND
PBM
Weirauch et al.(2014)
pTH9221
0.738 0.738
E2F2
M01963_2.00
Tupaia belangeri
WDVGCGCBHW

WDVGCGCBHW
PBM
Weirauch et al.(2014)
pTH9291
0.738 0.738
E2f2
M00154_2.00
Mus musculus
NDNNGCGSBN

NVSCGCNNHN
PBM
Badis et al.(2009)
E2F2_1022
0.723 0.723
E2FA
M06871_2.00
Arabidopsis thaliana
NDDDGGCGCCAWWW

WWWTGGCGCCHHHN
Dap-seq
OMalley et al.(2016)
E2FA_col_a
0.723 0.723
E2FA
M06872_2.00
Arabidopsis thaliana
DDWDGGCGCCAWAD

HTWTGGCGCCHWHH
Dap-seq
OMalley et al.(2016)
E2FA_colamp_a
0.723 0.723
E2FC
M06870_2.00
Arabidopsis thaliana
AWDDDGGCGCCAAAR

YTTTGGCGCCHHHWT
Dap-seq
OMalley et al.(2016)
E2FC_col_a
0.723 0.723
E2FA
M08106_2.00
Arabidopsis thaliana
NVGCGCCAHN

NDTGGCGCBN
ChIP-seq
Mathelier et al.(2014)
MA1414.1
0.723 0.723
E2f2
M09039_2.00
Mus musculus
GGCGCGMAWC

GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_MOUSE.H11MO.0.B
0.723 0.723
E2F2
M01961_2.00
Homo sapiens
DNSGCGCSNH

DNSGCGCSNH
PBM
Weirauch et al.(2014)
pTH9195
0.708 0.708
ENSOANG00000014967
M01962_2.00
Ornithorhynchus anatinus
NDSGCGCSHN

NDSGCGCSHN
PBM
Weirauch et al.(2014)
pTH9382
0.708 0.708
E2F3
M01964_2.00
Taeniopygia guttata
NNSGCGCGMN

NKCGCGCSNN
PBM
Weirauch et al.(2014)
pTH9288
0.708 0.708
E2F2
M02949_2.00
Homo sapiens
AAAAATGGCGCCAAAAWD

HWTTTTGGCGCCATTTTT
SELEX
Jolma et al.(2013)
E2F2_1
0.708 0.708
E2F2
M02950_2.00
Homo sapiens
VDTTTTGGCGCCAAAAHN

NDTTTTGGCGCCAAAAHB
SELEX
Jolma et al.(2013)
E2F2_2
0.708 0.708
E2F2
M02951_2.00
Homo sapiens
AAAWWGGCGCCAWTTT

AAAWTGGCGCCWWTTT
SELEX
Jolma et al.(2013)
E2F2_3
0.708 0.708
E2F2
M04696_2.00
Homo sapiens
GCGCGCGCSYW

WRSGCGCGCGC
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_1
0.708 0.708
E2F2
M04697_2.00
Homo sapiens
NDWWDGGCGCCWWHWN

NWDWWGGCGCCHWWHN
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_2
0.708 0.708
E2F2
M09029_2.00
Homo sapiens
GGCGCGMAWC

GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_HUMAN.H11MO.0.B
0.708 0.708
E2F2
M04698_2.00
Homo sapiens
SGBGSGCGCGS

SCGCGCSCVCS
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_1
0.708 0.708
E2F2
M04699_2.00
Homo sapiens
DWWWDGGCGCCAAAWH

DWTTTGGCGCCHWWWH
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_2
0.708 0.708
E2f3
M00153_2.00
Mus musculus
NNNNGCGSNN

NNSCGCNNNN
PBM
Badis et al.(2009)
E2F3_3752
0.692 0.692
E2F3
M02956_2.00
Homo sapiens
RAAAAKGGCGCCAAAANN

NNTTTTGGCGCCMTTTTY
SELEX
Jolma et al.(2013)
E2F3_1
0.692 0.692
E2F3
M02957_2.00
Homo sapiens
DAAAADGGCGCCMWWTTY

RAAWWKGGCGCCHTTTTH
SELEX
Jolma et al.(2013)
E2F3_2
0.692 0.692
E2F3
M02958_2.00
Homo sapiens
NDTTTTGGCGCCAAAABH

DVTTTTGGCGCCAAAAHN
SELEX
Jolma et al.(2013)
E2F3_3
0.692 0.692
E2F3
M04701_2.00
Homo sapiens
DWTTTGGCGCCAAAWH

DWTTTGGCGCCAAAWH
SELEX
Yin et al.(2017)
E2F3_eDBD_HT-SELEX
0.692 0.692
E2F3
M09031_2.00
Homo sapiens
NDGGCGGGAAR

YTTCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F3_HUMAN.H11MO.0.A
0.692 0.692
E2f3
M09038_2.00
Mus musculus
DSGCGGGARV

BYTCCCGCSH
Misc
Kulakovskiy et al.(2013)
E2F3_MOUSE.H11MO.0.A
0.692 0.692
E2F3
M10454_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q6_01
0.692 0.692
E2F3
M10455_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F3_Q6
0.692 0.692
E2F3
M04702_2.00
Homo sapiens
DTTTTGGCGCCAAAAH

DTTTTGGCGCCAAAAH
SELEX
Yin et al.(2017)
E2F3_eDBD_Methyl-HT-SELEX
0.692 0.692
E2f
M08196_2.00
Drosophila melanogaster
AAWWBSSCGSCAA

TTGSCGSSVWWTT
ChIP-seq
Contrino et al.(2012)
Mf10
0.677 0.677
E2F1
M02952_2.00
Homo sapiens
WWDGGCGCCAAW

WTTGGCGCCHWW
SELEX
Jolma et al.(2013)
E2F1_1
0.662 0.662
E2F1
M02953_2.00
Homo sapiens
WWKGGCGCCWWW

WWWGGCGCCMWW
SELEX
Jolma et al.(2013)
E2F1_2
0.662 0.662
E2F1
M02954_2.00
Homo sapiens
WWWKGGCGCCMWWW

WWWKGGCGCCMWWW
SELEX
Jolma et al.(2013)
E2F1_3
0.662 0.662
E2F1
M02955_2.00
Homo sapiens
AAWKGGCGCCAWTW

WAWTGGCGCCMWTT
SELEX
Jolma et al.(2013)
E2F1_4
0.662 0.662
E2F1
M04700_2.00
Homo sapiens
NWWWDGGCGCCAAAWH

DWTTTGGCGCCHWWWN
SELEX
Yin et al.(2017)
E2F1_FL_HT-SELEX
0.662 0.662
efl-1
M08110_2.00
Caenorhabditis elegans
HNHNSGCGSSAAWWN

NWWTTSSCGCSNDND
ChIP-seq
Mathelier et al.(2014)
MA0541.1
0.662 0.662
E2F1
M07938_2.00
Homo sapiens
VRRVNRVGCGSGMDS

SHKCSCGCBYNBYYB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F1_UCD
0.662 0.662
efl-1
M08197_2.00
Caenorhabditis elegans
BGCGSSAAWW

WWTTSSCGCV
ChIP-seq
Contrino et al.(2012)
Mw140
0.662 0.662
E2F1
M09030_2.00
Homo sapiens
NVNDGGCGGGARVN

NBYTCCCGCCHNBN
Misc
Kulakovskiy et al.(2013)
E2F1_HUMAN.H11MO.0.A
0.662 0.662
E2f1
M09041_2.00
Mus musculus
NDDGGCGGGRVN

NBYCCCGCCHHN
Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A
0.662 0.662
efl-1
M09526_2.00
Caenorhabditis elegans
WGCAARYGCGCTCYA

TRGAGCGCRYTTGCW
Misc
Heinz et al.(2010)
cElegans-L1-EFL1_modEncode
0.662 0.662
E2F1
M09521_2.00
Homo sapiens
NNGGCGGGAA

TTCCCGCCNN
Misc
Heinz et al.(2010)
Hela-E2F1_GSE22478
0.662 0.662
E2F1
M10444_2.00
Homo sapiens
THVGCGCGAAAAHKR

YMDTTTTCGCGCBDA
Transfac
Matys et al.(2006)
V$E2F_01
0.662 0.662
E2F1
M10445_2.00
Homo sapiens
BHKSGCGCSAAA

TTTSGCGCSMDV
Transfac
Matys et al.(2006)
V$E2F_03
0.662 0.662
E2F1
M10446_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_01
0.662 0.662
E2F1
M10447_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_02
0.662 0.662
E2F1
M10448_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3_01
0.662 0.662
E2F1
M10449_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3
0.662 0.662
E2F1
M10450_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_01
0.662 0.662
E2F1
M10451_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_02
0.662 0.662
E2F1
M10452_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4
0.662 0.662
E2F1
M10453_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q6
0.662 0.662
GSPATT00020286001
M01965_2.00
Paramecium tetraurelia
NNSGCGSBN

NVSCGCSNN
PBM
Weirauch et al.(2014)
pTH5647
0.615 0.615
E2F
M01959_2.00
Dictyostelium discoideum
NNGSGCGCSHN

NDSGCGCSCNN
PBM
Weirauch et al.(2014)
pTH5403
0.585 0.585
E2F6
M08107_2.00
Homo sapiens
DGGMGGGARVN

NBYTCCCKCCH
ChIP-seq
Mathelier et al.(2014)
MA0471.1
0.569 0.569
E2F6
M07939_2.00
Homo sapiens
NDSGCGGGARV

BYTCCCGCSHN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F6_UCD
0.569 0.569
E2F6
M07940_2.00
Homo sapiens
NDVGCGGGARV

BYTCCCGCBHN
ChIP-seq
Gerstein et al.(2012)
K562b_E2F6_UCD
0.569 0.569
E2F6
M07941_2.00
Homo sapiens
NDSGCGGGARV

BYTCCCGCSHN
ChIP-seq
Gerstein et al.(2012)
K562_E2F6_HudsonAlpha
0.569 0.569
E2F6
M09034_2.00
Homo sapiens
NRGGMGGGARRNN

NNYYTCCCKCCYN
Misc
Kulakovskiy et al.(2013)
E2F6_HUMAN.H11MO.0.A
0.569 0.569
E2f6
M09043_2.00
Mus musculus
NDGGCGGGARVV

BBYTCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F6_MOUSE.H11MO.0.A
0.569 0.569
E2F6
M09523_2.00
Homo sapiens
VGCGGGARNN

NNYTCCCGCB
Misc
Heinz et al.(2010)
Hela-E2F6_GSE31477
0.569 0.569
E2F6
M10456_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F6_01
0.569 0.569
estExt_gwp_GeneWisePlus.C_Chr_02.00010270
M01969_2.00
Ostreococcus tauri
HRVGCGCCNN

NNGGCGCBYD
PBM
Weirauch et al.(2014)
pTH5701
0.538 0.538
efl-2
M01966_2.00
Caenorhabditis elegans
NDBGCGSBNN

NNVSCGCVHN
PBM
Weirauch et al.(2014)
pTH5916
0.492 0.492
efl-2
M00662_2.00
Caenorhabditis elegans
NSGCGSNNDN

NHNNSCGCSN
PBM
Narasimhan et al.(2015)
pTH9173
0.492 0.492
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22032617m.p E2F 12 77

Links

Other E2F family TFs
Other Octopus bimaculoides TFs

1048 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL013653 Aedes aegypti AAEL013653 N 0.000
AALB008022 Anopheles albimanus AALB008022 N 0.000
AARA008085 Anopheles arabiensis AARA008085 N 0.000
AARA002613 Anopheles arabiensis AARA002613 N 0.000
AATE004417 Anopheles atroparvus AATE004417 N 0.000
ACHR000830 Anopheles christyi ACHR000830 N 0.000
ACHR003814 Anopheles christyi ACHR003814 N 0.000
ACOM038702 Anopheles coluzzii ACOM038702 N 0.000
ACOM025760 Anopheles coluzzii ACOM025760 N 0.000
ACUA017562 Anopheles culicifacies ACUA017562 N 0.000
ACUA022967 Anopheles culicifacies ACUA022967 N 0.000
ADAC005282 Anopheles darlingi ADAC005282 N 0.000
ADIR001353 Anopheles dirus ADIR001353 N 0.000
ADIR007200 Anopheles dirus ADIR007200 N 0.000
AEPI005949 Anopheles epiroticus AEPI005949 N 0.000
AEPI009152 Anopheles epiroticus AEPI009152 N 0.000
AFAF013567 Anopheles farauti AFAF013567 N 0.000
AFAF018377 Anopheles farauti AFAF018377 N 0.000
AFUN001038 Anopheles funestus AFUN001038 N 0.000
AFUN003868 Anopheles funestus AFUN003868 N 0.000
AGAP000336 Anopheles gambiae AGAP000336 N 0.000
AGAP007517 Anopheles gambiae AGAP007517 N 0.000
AMAM019785 Anopheles maculatus AMAM019785 N 0.000
AMEC000435 Anopheles melas AMEC000435 N 0.000
AMEM015155 Anopheles merus AMEM015155 N 0.000
AMEM008561 Anopheles merus AMEM008561 N 0.000
AMIN010411 Anopheles minimus AMIN010411 N 0.000
AMIN005487 Anopheles minimus AMIN005487 N 0.000
AQUA007272 Anopheles quadriannulatus AQUA007272 N 0.000
AQUA004406 Anopheles quadriannulatus AQUA004406 N 0.000
ASIS017447 Anopheles sinensis ASIS017447 N 0.000
ASTEI08810 Anopheles stephensi ASTEI08810 N 0.000
GB45421 Apis mellifera GB45421 N 0.000
ACEP26919 Atta cephalotes ACEP26919 N 0.000
BGIBMGA003121 Bombyx mori BGIBMGA003121 N 0.000
Cflo_02113--XP_396371.3_APIME Camponotus floridanus Cflo_02113--XP_396371.3_APIME N 0.000
CGI_10021242 Crassostrea gigas CGI_10021242 N 0.000
CpipJ_CPIJ003789 Culex pipiens CpipJ_CPIJ003789 N 0.000
CPIJ003789 Culex quinquefasciatus CPIJ003789 N 0.000
KGM_18877 Danaus plexippus KGM_18877 N 0.000
DAPPUDRAFT_304868 Daphnia pulex DAPPUDRAFT_304868 N 0.000
YQE_07182 Dendroctonus ponderosae YQE_07182 N 0.000
GF21727 Drosophila ananassae FBgn0098727 N 0.000
GG18249 Drosophila erecta FBgn0110465 N 0.000
GH11849 Drosophila grimshawi FBgn0119328 N 0.000
GH10255 Drosophila grimshawi FBgn0117736 N 0.000
Trf2 Drosophila melanogaster FBgn0261793 N 0.000
GI14331 Drosophila mojavensis FBgn0137084 N 0.000
GI15474 Drosophila mojavensis FBgn0138223 N 0.000
GL16412 Drosophila persimilis FBgn0154016 N 0.000
GA14764 Drosophila pseudoobscura FBgn0074791 N 0.000
GM21561 Drosophila sechellia FBgn0176441 N 0.000
GJ17285 Drosophila virilis FBgn0204460 N 0.000
GJ19385 Drosophila virilis FBgn0206528 N 0.000
GK16294 Drosophila willistoni FBgn0218296 N 0.000
GE15780 Drosophila yakuba FBgn0233345 N 0.000
HHAL006636-PA Halyomorpha halys HHAL006636-PA N 0.000
Hsal_05746--XP_396371.3_APIME Harpegnathos saltator Hsal_05746--XP_396371.3_APIME N 0.000
HMEL012402 Heliconius melpomene HMEL012402 N 0.000
ISCW018321 Ixodes scapularis ISCW018321 N 0.000
LDEC018353 Leptinotarsa decemlineata LDEC018353 N 0.000
LCUP013707 Lucilia cuprina LCUP013707 N 0.000
LLOJ009650 Lutzomyia longipalpis LLOJ009650 N 0.000
MCINX007554 Melitaea cinxia MCINX007554 N 0.000
MDOA002006 Musca domestica MDOA002006 N 0.000
NV17354 Nasonia vitripennis NV17354 N 0.000
Ocbimv22016635m.g Octopus bimaculoides Ocbimv22016635m.g N 0.000
PHUM375280 Pediculus humanus PHUM375280 N 0.000
PPAI002384 Phlebotomus papatasi PPAI002384 N 0.000
RPRC008747 Rhodnius prolixus RPRC008747 N 0.000
SINV24562 Solenopsis invicta SINV24562 N 0.000
SMAR014284 Strigamia maritima SMAR014284 N 0.000
TC014666 Tribolium castaneum TC014666 N 0.000
L798_06110 Zootermopsis nevadensis L798_06110 N 0.000