fgenesh1_pg.11_#_43 (Coccomyxa subellipsoidea C169)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 fgenesh1_pg.11_#_43 T173934_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.481 0.481
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.481 0.481
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.481 0.481
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.451 0.451
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.451 0.451
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.451 0.451
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.451 0.451
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.451 0.451
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.451 0.451
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
42835 E2F 245 310
42835 E2F 368 448

Links

Other E2F family TFs
Other Coccomyxa subellipsoidea C169 TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgeneshCV_pg.C_scaffold_10000045 Chlorella vulgaris fgeneshCV_pg.C_scaffold_10000045 I 1.000
IGS.gm_21_00108 Chlorella NC64A IGS.gm_21_00108 N 0.570
E2f8 Mus musculus ENSMUSG00000046179 I 0.481
GUITHDRAFT_133924 Guillardia theta GUITHDRAFT_133924 I 0.481
Cmyd_10016427 Chelonia mydas Cmyd_10016427 I 0.478
EuGene.0000050713 Micromonas pusilla EuGene.0000050713 I 0.478
EuGene.0800010516 Micromonas sp RCC299 EuGene.0800010516 I 0.478
CMT433C Cyanidioschyzon merolae CMT433C I 0.474
E2F8 Tursiops truncatus ENSTTRG00000005707 I 0.474
E2F8 Bos taurus ENSBTAG00000017446 I 0.474
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.474
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.474
ENSBTAP00000023190-D1 Bos grunniens ENSBTAP00000023190-D1 I 0.474
E2F8 Myotis lucifugus ENSMLUG00000015592 I 0.471
E2F8 Oryctolagus cuniculus ENSOCUG00000004485 I 0.471
E2F8 Otolemur garnettii ENSOGAG00000005774 I 0.471
ENSPPYG00000003424 Pongo abelii ENSPPYG00000003424 I 0.471
ENSPANG00000005225 Papio anubis ENSPANG00000005225 I 0.471
E2F8 Macaca mulatta ENSMMUG00000010853 I 0.471
ENSOARG00000008807 Ovis aries ENSOARG00000008807 I 0.471
ENSMPUG00000013899 Mustela putorius furo ENSMPUG00000013899 I 0.471
ENSPSIG00000008707 Pelodiscus sinensis ENSPSIG00000008707 I 0.471
E2F8 Monodelphis domestica ENSMODG00000009029 I 0.471
ENSNLEG00000017803 Nomascus leucogenys ENSNLEG00000017803 I 0.471
E2F8 Ornithorhynchus anatinus ENSOANG00000011290 I 0.471
ENSTSYG00000007279 Tarsius syrichta ENSTSYG00000007279 I 0.471
ENSP00000379463 Macaca fascicularis ENSP00000379463 I 0.471
Brh_R011115 Buceros rhinoceros Brh_R011115 I 0.471
Myotis_brandtii_E2F8_10018668 Myotis brandtii Myotis_brandtii_E2F8_10018668 I 0.471
Tal_R008430 Tyto alba Tal_R008430 I 0.471
fgenesh1_pg.scaffold_172000049 Physcomitrella patens fgenesh1_pg.scaffold_172000049 I 0.471
Afo_R006642 Aptenodytes forsteri Afo_R006642 I 0.471
Aan_R006648 Calypte anna Aan_R006648 I 0.471
E2F8 Sus scrofa ENSSSCG00000013352 I 0.471
ENSSTOG00000008838 Ictidomys tridecemlineatus ENSSTOG00000008838 I 0.471
e2f8 Tetraodon nigroviridis ENSTNIG00000009615 I 0.471
E2F8 Loxodonta africana ENSLAFG00000022713 I 0.471
E2f8 Rattus norvegicus ENSRNOG00000022537 I 0.471
ENSSHAG00000018372 Sarcophilus harrisii ENSSHAG00000018372 I 0.471
E2F8 Dasypus novemcinctus ENSDNOG00000003349 I 0.471
E2F8 Canis familiaris ENSCAFG00000009431 I 0.471
E2F8 Homo sapiens ENSG00000129173 D 0.471
E2F8 Felis catus ENSFCAG00000010706 I 0.471
ENSAPLG00000009091 Anas platyrhynchos ENSAPLG00000009091 I 0.471
ENSCSAG00000005093 Chlorocebus sabaeus ENSCSAG00000005093 I 0.471
E2f8 Dipodomys ordii ENSDORG00000000040 I 0.471
E2F8 Erinaceus europaeus ENSEEUG00000011472 I 0.471
E2F8 Cavia porcellus ENSCPOG00000013766 I 0.471
ENSAMEG00000017950 Ailuropoda melanoleuca ENSAMEG00000017950 I 0.471
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.466
E2F8 Meleagris gallopavo ENSMGAG00000002303 I 0.466
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.466
E2F8 Callithrix jacchus ENSCJAG00000006811 I 0.463
E2F8 Pan troglodytes ENSPTRG00000003435 I 0.463
ENSPSIG00000012629 Pelodiscus sinensis ENSPSIG00000012629 I 0.463
Cmyd_10011734 Chelonia mydas Cmyd_10011734 I 0.463
E2F8 Choloepus hoffmanni ENSCHOG00000006322 I 0.463
ENSCING00000014484 Ciona intestinalis ENSCING00000014484 I 0.463
ENSGALG00000004023 Gallus gallus ENSGALG00000004023 I 0.463
Pvit_06409 Pogona vitticeps Pvit_06409 I 0.463
fgenesh2_pg.scaffold_132000019 Physcomitrella patens fgenesh2_pg.scaffold_132000019 I 0.463
ENSLOCG00000004831 Lepisosteus oculatus ENSLOCG00000004831 I 0.463
E2F8 Pteropus vampyrus ENSPVAG00000012522 I 0.463
E2F7 Anolis carolinensis ENSACAG00000005414 I 0.463
E2F8 Anolis carolinensis ENSACAG00000015743 I 0.459
ENSFALG00000010433 Ficedula albicollis ENSFALG00000010433 I 0.459
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I 0.459
fgenesh1_pg.scaffold_121000063 Physcomitrella patens fgenesh1_pg.scaffold_121000063 I 0.458
E2F8 Procavia capensis ENSPCAG00000003996 I 0.457
e2f8 Danio rerio ENSDARG00000057323 I 0.456
E2F8 Taeniopygia guttata ENSTGUG00000015857 I 0.456
CAOG_00276 Capsaspora owczarzaki CAOG_00276 I 0.456
e2f8 Takifugu rubripes ENSTRUG00000015792 I 0.456
ENSONIG00000012070 Oreochromis niloticus ENSONIG00000012070 I 0.456
Ogr19156 Ophisaurus gracilis Ogr19156 I 0.456
e2f8 Oryzias latipes ENSORLG00000000786 I 0.456
Ocbimv22037571m.g Octopus bimaculoides Ocbimv22037571m.g I 0.456
ENSAMXG00000016864 Astyanax mexicanus ENSAMXG00000016864 I 0.456
e2f8 Gasterosteus aculeatus ENSGACG00000017086 I 0.456
e2f7 Xenopus tropicalis XB-GENE-1018445 I 0.456
ENSONIG00000007135 Oreochromis niloticus ENSONIG00000007135 I 0.456
Gfo_R003950 Geospiza fortis Gfo_R003950 I 0.456
ENSOARG00000014941 Ovis aries ENSOARG00000014941 I 0.453
E2F8 Tupaia belangeri ENSTBEG00000005521 I 0.452
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I 0.451
ENSSHAG00000002919 Sarcophilus harrisii ENSSHAG00000002919 I 0.451
E2F7 Procavia capensis ENSPCAG00000000596 I 0.451
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.451
maker-pir_contig_104-fgenesh-gene-0.11 Pythium irregulare maker-pir_contig_104-fgenesh-gene-0.11 I 0.449
ENSXMAG00000010237 Xiphophorus maculatus ENSXMAG00000010237 I 0.449
XP_002942881 Xenopus tropicalis XP_002942881 I 0.449
e2f7 Takifugu rubripes ENSTRUG00000001843 I 0.449
e2f8.L Xenopus laevis XB-GENE-1219153 I 0.449
Aan_R005623 Calypte anna Aan_R005623 I 0.449
Gfo_R003976 Geospiza fortis Gfo_R003976 I 0.449
Alligator_sinensis_CCG013467.1 Alligator sinensis Alligator_sinensis_CCG013467.1 I 0.449
Brh_R005316 Buceros rhinoceros Brh_R005316 I 0.449
Afo_R014077 Aptenodytes forsteri Afo_R014077 I 0.449
Myotis_brandtii_E2F7_10034114 Myotis brandtii Myotis_brandtii_E2F7_10034114 I 0.449
SELMODRAFT_451530 Selaginella moellendorffii SELMODRAFT_451530 I 0.449
Tal_R000495 Tyto alba Tal_R000495 I 0.449
SELMODRAFT_421405 Selaginella moellendorffii SELMODRAFT_421405 I 0.449
ENSXMAG00000006252 Xiphophorus maculatus ENSXMAG00000006252 I 0.449
ENSLOCG00000016279 Lepisosteus oculatus ENSLOCG00000016279 I 0.449
ENSORLG00000012301 Oryzias latipes ENSORLG00000012301 I 0.449
ENSFALG00000001625 Ficedula albicollis ENSFALG00000001625 I 0.449
e2f7 Tetraodon nigroviridis ENSTNIG00000005126 I 0.449
E2F7 Myotis lucifugus ENSMLUG00000012116 I 0.449
E2F7 Taeniopygia guttata ENSTGUG00000007515 I 0.449
ENSPFOG00000003272 Poecilia formosa ENSPFOG00000003272 I 0.449
ENSLACG00000016113 Latimeria chalumnae ENSLACG00000016113 I 0.449
E2F8 Ochotona princeps ENSOPRG00000012881 I 0.448
fgenesh_scip_prom.28083.1342 Phytophthora lateralis fgenesh_scip_prom.28083.1342 I 0.445
LPERR06G08240 Leersia perrieri LPERR06G08240 I 0.444
LotgiG168338 Lottia gigantea LotgiG168338 I 0.444
Sb10g008800 Sorghum bicolor Sb10g008800 I 0.444
E2F8 Vicugna pacos ENSVPAG00000012423 I 0.442
E2F7 Bos taurus ENSBTAG00000016931 I 0.441
ENSECAG00000017963 Equus caballus ENSECAG00000017963 I 0.441
E2F7 Echinops telfairi ENSETEG00000014750 I 0.441
E2F7 Otolemur garnettii ENSOGAG00000010821 I 0.441
E2F7 Ochotona princeps ENSOPRG00000001896 I 0.441
ENSP00000323246 Macaca fascicularis ENSP00000323246 I 0.441
ENSAPLG00000014506 Anas platyrhynchos ENSAPLG00000014506 I 0.441
ENSBTAP00000022518-D1 Bos grunniens ENSBTAP00000022518-D1 I 0.441
ENSPANG00000004929 Papio anubis ENSPANG00000004929 I 0.441
ENSMPUG00000017468 Mustela putorius furo ENSMPUG00000017468 I 0.441
ENSMEUG00000008461 Macropus eugenii ENSMEUG00000008461 I 0.441
E2F7 Meleagris gallopavo ENSMGAG00000010943 I 0.441
evm.TU.supercontig_35.34 Carica papaya evm.TU.supercontig_35.34 I 0.441
Pavir.Db01700 Panicum virgatum Pavir.Db01700 I 0.441
E2F7 Gorilla gorilla ENSGGOG00000012645 I 0.441
E2F7 Loxodonta africana ENSLAFG00000017902 I 0.441
E2F7 Homo sapiens ENSG00000165891 D 0.441
ENSAMEG00000007247 Ailuropoda melanoleuca ENSAMEG00000007247 I 0.441
ENSDORG00000003404 Dipodomys ordii ENSDORG00000003404 I 0.441
E2f7 Mus musculus ENSMUSG00000020185 D 0.441
E2F7 Felis catus ENSFCAG00000010756 I 0.441
E2F7 Monodelphis domestica ENSMODG00000020465 I 0.441
E2F7 Macaca mulatta ENSMMUG00000022846 I 0.441
ENSNLEG00000004897 Nomascus leucogenys ENSNLEG00000004897 I 0.441
E2F8 Equus caballus ENSECAG00000016457 I 0.441
ENSTSYG00000008243 Tarsius syrichta ENSTSYG00000008243 I 0.441
ENSCSAG00000003998 Chlorocebus sabaeus ENSCSAG00000003998 I 0.441
E2F7 Tursiops truncatus ENSTTRG00000000110 I 0.441
E2F7 Cavia porcellus ENSCPOG00000007375 I 0.441
ENSPPYG00000004791 Pongo abelii ENSPPYG00000004791 I 0.441
GRMZM2G060000 Zea mays GRMZM2G060000 I 0.441
ENSSTOG00000007887 Ictidomys tridecemlineatus ENSSTOG00000007887 I 0.441
E2F7 Vicugna pacos ENSVPAG00000011151 I 0.441
ENSGALG00000010265 Gallus gallus ENSGALG00000010265 I 0.441
E2F7 Dasypus novemcinctus ENSDNOG00000001580 I 0.441
E2F7 Sus scrofa ENSSSCG00000000950 I 0.441
E2F7 Tupaia belangeri ENSTBEG00000005417 I 0.441
E2F7 Sorex araneus ENSSARG00000004122 I 0.441
E2f7 Rattus norvegicus ENSRNOG00000026252 I 0.441
TCM_011971 Theobroma cacao TCM_011971 I 0.441
E2F7 Pteropus vampyrus ENSPVAG00000000288 I 0.441
PYU1_G013070 Pythium ultimum PYU1_G013070 I 0.441
Si006412m.g Setaria italica Si006412m.g I 0.441
E2F7 Callithrix jacchus ENSCJAG00000019162 I 0.441
E2F7 Pan troglodytes ENSPTRG00000005245 I 0.441
Pavir.Da01202 Panicum virgatum Pavir.Da01202 I 0.440
Cagra.4239s0004 Capsella grandiflora Cagra.4239s0004 I 0.436
Bostr.18473s0137 Boechera stricta Bostr.18473s0137 I 0.436
gw1.8.144.1 Ostreococcus RCC809 gw1.8.144.1 I 0.436
Carubv10018365m.g Capsella rubella Carubv10018365m.g I 0.436
TCM_017926 Theobroma cacao TCM_017926 I 0.436
GLYMA06G19843 Glycine max GLYMA06G19843 I 0.436
Gorai.004G114000 Gossypium raimondii Gorai.004G114000 I 0.434
Aquca_025_00187 Aquilegia coerulea Aquca_025_00187 I 0.434
GLYMA05G01760 Glycine max GLYMA05G01760 I 0.434
maker-pve_contig_484-snap-gene-0.19 Pythium vexans maker-pve_contig_484-snap-gene-0.19 I 0.434
MLOC_67050 Hordeum vulgare MLOC_67050 I 0.434
CGI_10023548 Crassostrea gigas CGI_10023548 I 0.434
maker-piw_contig_1993-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1993-fgenesh-gene-0.1 I 0.434
E2F7 Canis familiaris ENSCAFG00000005718 I 0.434
F443_02115 Phytophthora parasitica F443_02115 I 0.434
F775_15908 Aegilops tauschii F775_15908 I 0.434
TTHERM_01076950 Tetrahymena thermophila TTHERM_01076950 I 0.430
PDK_20s1335201g002 Phoenix dactylifera PDK_20s1335201g002 I 0.429
Cucsa.197250 Cucumis sativus Cucsa.197250 I 0.429
OBART06G09260 Oryza barthii OBART06G09260 I 0.429
OB02G38920 Oryza brachyantha OB02G38920 I 0.429
GRMZM2G378665 Zea mays GRMZM2G378665 I 0.429
cassava17583.valid.m1 Manihot esculenta cassava17583.valid.m1 I 0.429
Cucsa.098190 Cucumis sativus Cucsa.098190 I 0.429