MDP0000258338 (Malus domestica)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 MDP0000258338 T173978_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2FC
M06870_2.00
Arabidopsis thaliana
AWDDDGGCGCCAAAR

YTTTGGCGCCHHHWT
Dap-seq
OMalley et al.(2016)
E2FC_col_a
0.453 0.453
E2F4
M02961_2.00
Homo sapiens
AATGGCGCCAAA

TTTGGCGCCATT
SELEX
Jolma et al.(2013)
E2F4_1
0.438 0.438
E2F4
M02962_2.00
Homo sapiens
TTTGGCGCCAAA

TTTGGCGCCAAA
SELEX
Jolma et al.(2013)
E2F4_2
0.438 0.438
E2F4
M04707_2.00
Homo sapiens
NWWKGGCGCCAAAW

WTTTGGCGCCMWWN
SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX
0.438 0.438
E2F4
M08109_2.00
Homo sapiens
NSGCGGGARVN

NBYTCCCGCSN
ChIP-seq
Mathelier et al.(2014)
MA0470.1
0.438 0.438
E2F4
M07942_2.00
Homo sapiens
SGCGSGARDNNBNVN

NBNVNNHYTCSCGCS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD
0.438 0.438
E2F4
M07943_2.00
Homo sapiens
SGCGGGARDNNBVVN

NBBVNNHYTCCCGCS
ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD
0.438 0.438
E2F4
M09036_2.00
Homo sapiens
VDRGGCGGGRVND

HNBYCCCGCCYHB
Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A
0.438 0.438
E2f4
M09037_2.00
Mus musculus
NRDDGGCGGGRMNN

NNKYCCCGCCHHYN
Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A
0.438 0.438
E2f5
M09042_2.00
Mus musculus
NGCGCSAAAN

NTTTSGCGCN
Misc
Kulakovskiy et al.(2013)
E2F5_MOUSE.H11MO.0.B
0.438 0.438
E2F4
M09524_2.00
Homo sapiens
VGCGSGAADH

DHTTCSCGCB
Misc
Heinz et al.(2010)
K562-E2F4_GSE31477
0.438 0.438
E2F4
M10457_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_05
0.438 0.438
E2F4
M10458_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q3
0.438 0.438
E2F4
M10459_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q6
0.438 0.438
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000258338 E2F 9 77

Links

Other E2F family TFs
Other Malus domestica TFs

Invalid Input OrderBy

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action