orange1.1g018827m.g (Citrus sinensis)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 orange1.1g018827m.g T173987_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TFDP1
M08108_2.00
Homo sapiens
NSGCGGGAAVN

NBTTCCCGCSN
ChIP-seq
Mathelier et al.(2014)
MA1122.1
0.794 0.794
TFDP1
M09035_2.00
Homo sapiens
VRDDGGCGGGAMDN

NHKTCCCGCCHHYB
Misc
Kulakovskiy et al.(2013)
TFDP1_HUMAN.H11MO.0.C
0.794 0.794
dpl-1
M09525_2.00
Caenorhabditis elegans
GCGCGYHW

WDRCGCGC
Misc
Heinz et al.(2010)
cElegans-Adult_modEncode
0.735 0.735
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g018827m E2F 96 178
orange1.1g024196m E2F 96 178
orange1.1g024762m E2F 96 178

Links

Other E2F family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

545 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action