augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0 (Meloidogyne floridensis)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0 T174229_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA

TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.456 0.456
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN

NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.456 0.456
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN

NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.456 0.456
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.430 0.430
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN

NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.430 0.430
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.430 0.430
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV

BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.430 0.430
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN

NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.430 0.430
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH

DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.430 0.430
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0-mRNA-1 E2F 62 128
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0-mRNA-1 E2F 207 262

Links

Other E2F family TFs
Other Meloidogyne floridensis TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Minc05731 Meloidogyne incognita Minc05731 I 1.000
Minc04041 Meloidogyne incognita Minc04041 I 1.000
maker-nMf.1.1.scaf01659-augustus-gene-0.9 Meloidogyne floridensis maker-nMf.1.1.scaf01659-augustus-gene-0.9 I 1.000
MhA1_Contig130.frz3.gene44 Meloidogyne hapla MhA1_Contig130.frz3.gene44 I 0.991
L596_g12895 Steinernema carpocapsae L596_g12895 I 0.789
TCNE_0000873901 Toxocara canis TCNE_0000873901 I 0.781
ASU_04096 Ascaris suum ASU_04096 I 0.781
ALUE_0000773501 Ascaris lumbricoides ALUE_0000773501 I 0.781
L892_g1818 Steinernema scapterisci L892_g1818 I 0.772
ACAC_0000024001 Angiostrongylus cantonensis ACAC_0000024001 I 0.772
SMUV_0000434101 Syphacia muris SMUV_0000434101 I 0.772
efl-3 Caenorhabditis elegans WBGene00009899 I 0.763
DICVIV_01764 Dictyocaulus viviparus DICVIV_01764 I 0.763
ANCCAN_04600 Ancylostoma caninum ANCCAN_04600 I 0.763
HPBE_0000610601 Heligmosomoides bakeri HPBE_0000610601 I 0.763
HCOI01892600 Haemonchus contortus HCOI01892600 I 0.763
CJA26768 Caenorhabditis japonica CJA26768 I 0.754
L889_g28422 Steinernema feltiae L889_g28422 I 0.754
TELCIR_03927 Teladorsagia circumcincta TELCIR_03927 I 0.754
scaffold884-EXSNAP2012.1 Pristionchus exspectatus scaffold884-EXSNAP2012.1 I 0.702
PPA21298 Pristionchus pacificus PPA21298 I 0.702
scaffold51-EXSNAP2012.35 Pristionchus exspectatus scaffold51-EXSNAP2012.35 I 0.693
BXY_1693900 Bursaphelenchus xylophilus BXY_1693900 I 0.675
CGOC_0000227901 Cylicostephanus goldi CGOC_0000227901 N 0.667
L898_g3621 Steinernema monticolum L898_g3621 I 0.658
L893_g19965 Steinernema glaseri L893_g19965 I 0.652
ASIM_0001001801 Anisakis simplex ASIM_0001001801 I 0.652
CRE01589 Caenorhabditis remanei CRE01589 I 0.637
OESDEN_14635 Oesophagostomum dentatum OESDEN_14635 I 0.632
CBN23380 Caenorhabditis brenneri CBN23380 I 0.630
CBG00680 Caenorhabditis briggsae CBG00680 I 0.622
TCLT_0000737401 Thelazia callipaeda TCLT_0000737401 N 0.570
WUBG_01805 Wuchereria bancrofti WUBG_01805 N 0.561
nDi.2.2.2.g08162 Dirofilaria immitis nDi.2.2.2.g08162 N 0.561
LOAG_07147 Loa loa LOAG_07147 N 0.561
nOo.2.0.1.g06441 Onchocerca ochengi nOo.2.0.1.g06441 N 0.553
WBGene00247952 Onchocerca volvulus WBGene00247952 N 0.553
OFLC_0000212001 Onchocerca flexuosa OFLC_0000212001 N 0.553
TELCIR_22846 Teladorsagia circumcincta TELCIR_22846 I 0.553
nLs.2.1.2.g03748 Litomosoides sigmodontis nLs.2.1.2.g03748 N 0.553
EVEC_0001263301 Enterobius vermicularis EVEC_0001263301 N 0.544
Bm4234 Brugia malayi Bm4234 N 0.544
OESDEN_13289 Oesophagostomum dentatum OESDEN_13289 I 0.541
DME_0000727201 Dracunculus medinensis DME_0000727201 I 0.526
ENSONIG00000007135 Oreochromis niloticus ENSONIG00000007135 I 0.465
e2f8 Tetraodon nigroviridis ENSTNIG00000009615 I 0.465
ENSSHAG00000018372 Sarcophilus harrisii ENSSHAG00000018372 I 0.456
ENSPPYG00000003424 Pongo abelii ENSPPYG00000003424 I 0.456
ENSP00000379463 Macaca fascicularis ENSP00000379463 I 0.456
E2F8 Tursiops truncatus ENSTTRG00000005707 I 0.456
E2F8 Pan troglodytes ENSPTRG00000003435 I 0.456
ENSPANG00000005225 Papio anubis ENSPANG00000005225 I 0.456
ENSNLEG00000017803 Nomascus leucogenys ENSNLEG00000017803 I 0.456
E2F8 Macaca mulatta ENSMMUG00000010853 I 0.456
E2F8 Monodelphis domestica ENSMODG00000009029 I 0.456
ENSLOCG00000004831 Lepisosteus oculatus ENSLOCG00000004831 I 0.456
ENSLACG00000016113 Latimeria chalumnae ENSLACG00000016113 I 0.456
E2F8 Homo sapiens ENSG00000129173 D 0.456
e2f8 Gasterosteus aculeatus ENSGACG00000017086 I 0.456
e2f8.L Xenopus laevis XB-GENE-1219153 I 0.456
ENSCSAG00000005093 Chlorocebus sabaeus ENSCSAG00000005093 I 0.456
Myotis_brandtii_E2F8_10018668 Myotis brandtii Myotis_brandtii_E2F8_10018668 I 0.447
LotgiG168338 Lottia gigantea LotgiG168338 I 0.447
XP_002942881 Xenopus tropicalis XP_002942881 I 0.447
NECAME_17546 Necator americanus NECAME_17546 N 0.447
Brh_R011115 Buceros rhinoceros Brh_R011115 I 0.447
Cmyd_10016427 Chelonia mydas Cmyd_10016427 I 0.447
Afo_R006642 Aptenodytes forsteri Afo_R006642 I 0.447
ENSTSYG00000007279 Tarsius syrichta ENSTSYG00000007279 I 0.447
E2f8 Mus musculus ENSMUSG00000046179 I 0.447
ENSMPUG00000013899 Mustela putorius furo ENSMPUG00000013899 I 0.447
E2F8 Myotis lucifugus ENSMLUG00000015592 I 0.447
ENSOARG00000008807 Ovis aries ENSOARG00000008807 I 0.447
E2F8 Oryctolagus cuniculus ENSOCUG00000004485 I 0.447
e2f8 Oryzias latipes ENSORLG00000000786 I 0.447
E2F8 Otolemur garnettii ENSOGAG00000005774 I 0.447
E2F8 Loxodonta africana ENSLAFG00000022713 I 0.447
E2F8 Felis catus ENSFCAG00000010706 I 0.447
ENSAPLG00000009091 Anas platyrhynchos ENSAPLG00000009091 I 0.447
ENSAMEG00000017950 Ailuropoda melanoleuca ENSAMEG00000017950 I 0.447
E2F8 Canis familiaris ENSCAFG00000009431 I 0.447
E2F8 Cavia porcellus ENSCPOG00000013766 I 0.447
E2F8 Erinaceus europaeus ENSEEUG00000011472 I 0.447
E2F8 Dasypus novemcinctus ENSDNOG00000003349 I 0.447
ENSPSIG00000008707 Pelodiscus sinensis ENSPSIG00000008707 I 0.447
E2F8 Ornithorhynchus anatinus ENSOANG00000011290 I 0.447
E2F8 Pteropus vampyrus ENSPVAG00000012522 I 0.447
E2F8 Sus scrofa ENSSSCG00000013352 I 0.447
E2f8 Rattus norvegicus ENSRNOG00000022537 I 0.447
ENSSTOG00000008838 Ictidomys tridecemlineatus ENSSTOG00000008838 I 0.447
NV16280 Nasonia vitripennis NV16280 I 0.439
E2F7 Myotis lucifugus ENSMLUG00000012116 I 0.439
E2F8 Meleagris gallopavo ENSMGAG00000002303 I 0.439
ENSLOCG00000016279 Lepisosteus oculatus ENSLOCG00000016279 I 0.439
Myotis_brandtii_E2F7_10034114 Myotis brandtii Myotis_brandtii_E2F7_10034114 I 0.439
E2F7 Anolis carolinensis ENSACAG00000005414 I 0.439
ENSGALG00000004023 Gallus gallus ENSGALG00000004023 I 0.439
E2F8 Gorilla gorilla ENSGGOG00000011430 I 0.439
ENSGMOG00000019253 Gadus morhua ENSGMOG00000019253 I 0.439
E2f8 Dipodomys ordii ENSDORG00000000040 I 0.439
ENSAMXG00000016864 Astyanax mexicanus ENSAMXG00000016864 I 0.439
E2F7 Echinops telfairi ENSETEG00000014750 I 0.430
e2f8 Danio rerio ENSDARG00000057323 I 0.430
ENSXMAG00000010237 Xiphophorus maculatus ENSXMAG00000010237 I 0.430
E2F8 Anolis carolinensis ENSACAG00000015743 I 0.430
CGI_10023548 Crassostrea gigas CGI_10023548 I 0.430
E2F7 Vicugna pacos ENSVPAG00000011151 I 0.430
E2F7 Bos taurus ENSBTAG00000016931 I 0.430
ENSSHAG00000002919 Sarcophilus harrisii ENSSHAG00000002919 I 0.430
ENSTSYG00000008243 Tarsius syrichta ENSTSYG00000008243 I 0.430
E2F8 Bos taurus ENSBTAG00000017446 I 0.430
E2F7 Dasypus novemcinctus ENSDNOG00000001580 I 0.430
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.430
gw1.8.144.1 Ostreococcus RCC809 gw1.8.144.1 I 0.430
ENSBTAP00000023190-D1 Bos grunniens ENSBTAP00000023190-D1 I 0.430
ENSBTAP00000022518-D1 Bos grunniens ENSBTAP00000022518-D1 I 0.430
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.430
Pvit_06409 Pogona vitticeps Pvit_06409 I 0.430
ENSPSIG00000012629 Pelodiscus sinensis ENSPSIG00000012629 I 0.430
Ogr19156 Ophisaurus gracilis Ogr19156 I 0.430
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.430
ENSOARG00000014941 Ovis aries ENSOARG00000014941 I 0.430
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.430
ENSMEUG00000008461 Macropus eugenii ENSMEUG00000008461 I 0.430
E2F7 Monodelphis domestica ENSMODG00000020465 I 0.430
Alligator_sinensis_CCG013467.1 Alligator sinensis Alligator_sinensis_CCG013467.1 I 0.430
Cmyd_10011734 Chelonia mydas Cmyd_10011734 I 0.430
ISCW021939 Ixodes scapularis ISCW021939 I 0.430
E2F7 Loxodonta africana ENSLAFG00000017902 I 0.430