CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0
(
Meloidogyne floridensis
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02319 (E2F_TDP)
IPR003316
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0
T174229_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.456
0.456
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.456
0.456
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.456
0.456
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.430
0.430
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.430
0.430
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.430
0.430
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.430
0.430
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.430
0.430
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.430
0.430
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0-mRNA-1
E2F
62
128
KEKSLGKLCAPFLERVSLEAAQGRDVHLESVARSMNVEKRRIYDIVNVMEALEVMQKTNKSFYKWHG
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0-mRNA-1
E2F
207
262
GKNSLAQLCRRFLMVLLCNPNRAVSLDVVSTMLIKDLDSEGYEPPSRSRCRRLYDI
Links
Other
E2F
family TFs
Other
Meloidogyne floridensis
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc05731
Meloidogyne incognita
Minc05731
I
1.000
Minc04041
Meloidogyne incognita
Minc04041
I
1.000
maker-nMf.1.1.scaf01659-augustus-gene-0.9
Meloidogyne floridensis
maker-nMf.1.1.scaf01659-augustus-gene-0.9
I
1.000
MhA1_Contig130.frz3.gene44
Meloidogyne hapla
MhA1_Contig130.frz3.gene44
I
0.991
L596_g12895
Steinernema carpocapsae
L596_g12895
I
0.789
TCNE_0000873901
Toxocara canis
TCNE_0000873901
I
0.781
ASU_04096
Ascaris suum
ASU_04096
I
0.781
ALUE_0000773501
Ascaris lumbricoides
ALUE_0000773501
I
0.781
L892_g1818
Steinernema scapterisci
L892_g1818
I
0.772
ACAC_0000024001
Angiostrongylus cantonensis
ACAC_0000024001
I
0.772
SMUV_0000434101
Syphacia muris
SMUV_0000434101
I
0.772
efl-3
Caenorhabditis elegans
WBGene00009899
I
0.763
DICVIV_01764
Dictyocaulus viviparus
DICVIV_01764
I
0.763
ANCCAN_04600
Ancylostoma caninum
ANCCAN_04600
I
0.763
HPBE_0000610601
Heligmosomoides bakeri
HPBE_0000610601
I
0.763
HCOI01892600
Haemonchus contortus
HCOI01892600
I
0.763
CJA26768
Caenorhabditis japonica
CJA26768
I
0.754
L889_g28422
Steinernema feltiae
L889_g28422
I
0.754
TELCIR_03927
Teladorsagia circumcincta
TELCIR_03927
I
0.754
scaffold884-EXSNAP2012.1
Pristionchus exspectatus
scaffold884-EXSNAP2012.1
I
0.702
PPA21298
Pristionchus pacificus
PPA21298
I
0.702
scaffold51-EXSNAP2012.35
Pristionchus exspectatus
scaffold51-EXSNAP2012.35
I
0.693
BXY_1693900
Bursaphelenchus xylophilus
BXY_1693900
I
0.675
CGOC_0000227901
Cylicostephanus goldi
CGOC_0000227901
N
0.667
L898_g3621
Steinernema monticolum
L898_g3621
I
0.658
L893_g19965
Steinernema glaseri
L893_g19965
I
0.652
ASIM_0001001801
Anisakis simplex
ASIM_0001001801
I
0.652
CRE01589
Caenorhabditis remanei
CRE01589
I
0.637
OESDEN_14635
Oesophagostomum dentatum
OESDEN_14635
I
0.632
CBN23380
Caenorhabditis brenneri
CBN23380
I
0.630
CBG00680
Caenorhabditis briggsae
CBG00680
I
0.622
TCLT_0000737401
Thelazia callipaeda
TCLT_0000737401
N
0.570
WUBG_01805
Wuchereria bancrofti
WUBG_01805
N
0.561
nDi.2.2.2.g08162
Dirofilaria immitis
nDi.2.2.2.g08162
N
0.561
LOAG_07147
Loa loa
LOAG_07147
N
0.561
nOo.2.0.1.g06441
Onchocerca ochengi
nOo.2.0.1.g06441
N
0.553
WBGene00247952
Onchocerca volvulus
WBGene00247952
N
0.553
OFLC_0000212001
Onchocerca flexuosa
OFLC_0000212001
N
0.553
TELCIR_22846
Teladorsagia circumcincta
TELCIR_22846
I
0.553
nLs.2.1.2.g03748
Litomosoides sigmodontis
nLs.2.1.2.g03748
N
0.553
EVEC_0001263301
Enterobius vermicularis
EVEC_0001263301
N
0.544
Bm4234
Brugia malayi
Bm4234
N
0.544
OESDEN_13289
Oesophagostomum dentatum
OESDEN_13289
I
0.541
DME_0000727201
Dracunculus medinensis
DME_0000727201
I
0.526
ENSONIG00000007135
Oreochromis niloticus
ENSONIG00000007135
I
0.465
e2f8
Tetraodon nigroviridis
ENSTNIG00000009615
I
0.465
ENSSHAG00000018372
Sarcophilus harrisii
ENSSHAG00000018372
I
0.456
ENSPPYG00000003424
Pongo abelii
ENSPPYG00000003424
I
0.456
ENSP00000379463
Macaca fascicularis
ENSP00000379463
I
0.456
E2F8
Tursiops truncatus
ENSTTRG00000005707
I
0.456
E2F8
Pan troglodytes
ENSPTRG00000003435
I
0.456
ENSPANG00000005225
Papio anubis
ENSPANG00000005225
I
0.456
ENSNLEG00000017803
Nomascus leucogenys
ENSNLEG00000017803
I
0.456
E2F8
Macaca mulatta
ENSMMUG00000010853
I
0.456
E2F8
Monodelphis domestica
ENSMODG00000009029
I
0.456
ENSLOCG00000004831
Lepisosteus oculatus
ENSLOCG00000004831
I
0.456
ENSLACG00000016113
Latimeria chalumnae
ENSLACG00000016113
I
0.456
E2F8
Homo sapiens
ENSG00000129173
D
0.456
e2f8
Gasterosteus aculeatus
ENSGACG00000017086
I
0.456
e2f8.L
Xenopus laevis
XB-GENE-1219153
I
0.456
ENSCSAG00000005093
Chlorocebus sabaeus
ENSCSAG00000005093
I
0.456
Myotis_brandtii_E2F8_10018668
Myotis brandtii
Myotis_brandtii_E2F8_10018668
I
0.447
LotgiG168338
Lottia gigantea
LotgiG168338
I
0.447
XP_002942881
Xenopus tropicalis
XP_002942881
I
0.447
NECAME_17546
Necator americanus
NECAME_17546
N
0.447
Brh_R011115
Buceros rhinoceros
Brh_R011115
I
0.447
Cmyd_10016427
Chelonia mydas
Cmyd_10016427
I
0.447
Afo_R006642
Aptenodytes forsteri
Afo_R006642
I
0.447
ENSTSYG00000007279
Tarsius syrichta
ENSTSYG00000007279
I
0.447
E2f8
Mus musculus
ENSMUSG00000046179
I
0.447
ENSMPUG00000013899
Mustela putorius furo
ENSMPUG00000013899
I
0.447
E2F8
Myotis lucifugus
ENSMLUG00000015592
I
0.447
ENSOARG00000008807
Ovis aries
ENSOARG00000008807
I
0.447
E2F8
Oryctolagus cuniculus
ENSOCUG00000004485
I
0.447
e2f8
Oryzias latipes
ENSORLG00000000786
I
0.447
E2F8
Otolemur garnettii
ENSOGAG00000005774
I
0.447
E2F8
Loxodonta africana
ENSLAFG00000022713
I
0.447
E2F8
Felis catus
ENSFCAG00000010706
I
0.447
ENSAPLG00000009091
Anas platyrhynchos
ENSAPLG00000009091
I
0.447
ENSAMEG00000017950
Ailuropoda melanoleuca
ENSAMEG00000017950
I
0.447
E2F8
Canis familiaris
ENSCAFG00000009431
I
0.447
E2F8
Cavia porcellus
ENSCPOG00000013766
I
0.447
E2F8
Erinaceus europaeus
ENSEEUG00000011472
I
0.447
E2F8
Dasypus novemcinctus
ENSDNOG00000003349
I
0.447
ENSPSIG00000008707
Pelodiscus sinensis
ENSPSIG00000008707
I
0.447
E2F8
Ornithorhynchus anatinus
ENSOANG00000011290
I
0.447
E2F8
Pteropus vampyrus
ENSPVAG00000012522
I
0.447
E2F8
Sus scrofa
ENSSSCG00000013352
I
0.447
E2f8
Rattus norvegicus
ENSRNOG00000022537
I
0.447
ENSSTOG00000008838
Ictidomys tridecemlineatus
ENSSTOG00000008838
I
0.447
NV16280
Nasonia vitripennis
NV16280
I
0.439
E2F7
Myotis lucifugus
ENSMLUG00000012116
I
0.439
E2F8
Meleagris gallopavo
ENSMGAG00000002303
I
0.439
ENSLOCG00000016279
Lepisosteus oculatus
ENSLOCG00000016279
I
0.439
Myotis_brandtii_E2F7_10034114
Myotis brandtii
Myotis_brandtii_E2F7_10034114
I
0.439
E2F7
Anolis carolinensis
ENSACAG00000005414
I
0.439
ENSGALG00000004023
Gallus gallus
ENSGALG00000004023
I
0.439
E2F8
Gorilla gorilla
ENSGGOG00000011430
I
0.439
ENSGMOG00000019253
Gadus morhua
ENSGMOG00000019253
I
0.439
E2f8
Dipodomys ordii
ENSDORG00000000040
I
0.439
ENSAMXG00000016864
Astyanax mexicanus
ENSAMXG00000016864
I
0.439
E2F7
Echinops telfairi
ENSETEG00000014750
I
0.430
e2f8
Danio rerio
ENSDARG00000057323
I
0.430
ENSXMAG00000010237
Xiphophorus maculatus
ENSXMAG00000010237
I
0.430
E2F8
Anolis carolinensis
ENSACAG00000015743
I
0.430
CGI_10023548
Crassostrea gigas
CGI_10023548
I
0.430
E2F7
Vicugna pacos
ENSVPAG00000011151
I
0.430
E2F7
Bos taurus
ENSBTAG00000016931
I
0.430
ENSSHAG00000002919
Sarcophilus harrisii
ENSSHAG00000002919
I
0.430
ENSTSYG00000008243
Tarsius syrichta
ENSTSYG00000008243
I
0.430
E2F8
Bos taurus
ENSBTAG00000017446
I
0.430
E2F7
Dasypus novemcinctus
ENSDNOG00000001580
I
0.430
Alligator_sinensis_CCG013028.1
Alligator sinensis
Alligator_sinensis_CCG013028.1
I
0.430
gw1.8.144.1
Ostreococcus RCC809
gw1.8.144.1
I
0.430
ENSBTAP00000023190-D1
Bos grunniens
ENSBTAP00000023190-D1
I
0.430
ENSBTAP00000022518-D1
Bos grunniens
ENSBTAP00000022518-D1
I
0.430
Pvit_10252
Pogona vitticeps
Pvit_10252
I
0.430
Pvit_06409
Pogona vitticeps
Pvit_06409
I
0.430
ENSPSIG00000012629
Pelodiscus sinensis
ENSPSIG00000012629
I
0.430
Ogr19156
Ophisaurus gracilis
Ogr19156
I
0.430
E2F7
Oryctolagus cuniculus
ENSOCUG00000004932
I
0.430
ENSOARG00000014941
Ovis aries
ENSOARG00000014941
I
0.430
Alligator_sinensis_CCG013028.2
Alligator sinensis
Alligator_sinensis_CCG013028.2
I
0.430
ENSMEUG00000008461
Macropus eugenii
ENSMEUG00000008461
I
0.430
E2F7
Monodelphis domestica
ENSMODG00000020465
I
0.430
Alligator_sinensis_CCG013467.1
Alligator sinensis
Alligator_sinensis_CCG013467.1
I
0.430
Cmyd_10011734
Chelonia mydas
Cmyd_10011734
I
0.430
ISCW021939
Ixodes scapularis
ISCW021939
I
0.430
E2F7
Loxodonta africana
ENSLAFG00000017902
I
0.430