CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HCOI00990100
(
Haemonchus contortus
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02319 (E2F_TDP)
IPR003316
HCOI00990100
T174278_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
efl-2
M01966_2.00
Caenorhabditis elegans
NDBGCGSBNN
NNVSCGCVHN
PBM
Weirauch et al.(2014)
pTH5916
0.468
0.468
efl-2
M00662_2.00
Caenorhabditis elegans
NSGCGSNNDN
NHNNSCGCSN
PBM
Narasimhan et al.(2015)
pTH9173
0.468
0.468
E2FC
M06870_2.00
Arabidopsis thaliana
AWDDDGGCGCCAAAR
YTTTGGCGCCHHHWT
Dap-seq
OMalley et al.(2016)
E2FC_col_a
0.468
0.468
E2F
M01959_2.00
Dictyostelium discoideum
NNGSGCGCSHN
NDSGCGCSCNN
PBM
Weirauch et al.(2014)
pTH5403
0.452
0.452
GSPATT00020286001
M01965_2.00
Paramecium tetraurelia
NNSGCGSBN
NVSCGCSNN
PBM
Weirauch et al.(2014)
pTH5647
0.452
0.452
TVAG_062990
M01967_2.00
Trichomonas vaginalis
NNSGCGSBNN
NNVSCGCSNN
PBM
Weirauch et al.(2014)
pTH5727
0.435
0.435
e_gw1.38.2.1
M01968_2.00
Physcomitrella patens
NSGCGCBHHN
NDDVGCGCSN
PBM
Weirauch et al.(2014)
pTH5707
0.435
0.435
estExt_gwp_gw1.C_220046
M01225_2.00
Physcomitrella patens
VGCGCBHHNN
NNDDVGCGCB
PBM
Lambert et al.(2019)
pTH9809
0.435
0.435
E2F4
M02961_2.00
Homo sapiens
AATGGCGCCAAA
TTTGGCGCCATT
SELEX
Jolma et al.(2013)
E2F4_1
0.435
0.435
E2F4
M02962_2.00
Homo sapiens
TTTGGCGCCAAA
TTTGGCGCCAAA
SELEX
Jolma et al.(2013)
E2F4_2
0.435
0.435
E2F4
M04707_2.00
Homo sapiens
NWWKGGCGCCAAAW
WTTTGGCGCCMWWN
SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX
0.435
0.435
E2F4
M08109_2.00
Homo sapiens
NSGCGGGARVN
NBYTCCCGCSN
ChIP-seq
Mathelier et al.(2014)
MA0470.1
0.435
0.435
E2F4
M07942_2.00
Homo sapiens
SGCGSGARDNNBNVN
NBNVNNHYTCSCGCS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD
0.435
0.435
E2F4
M07943_2.00
Homo sapiens
SGCGGGARDNNBVVN
NBBVNNHYTCCCGCS
ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD
0.435
0.435
E2f
M08196_2.00
Drosophila melanogaster
AAWWBSSCGSCAA
TTGSCGSSVWWTT
ChIP-seq
Contrino et al.(2012)
Mf10
0.435
0.435
E2F4
M09036_2.00
Homo sapiens
VDRGGCGGGRVND
HNBYCCCGCCYHB
Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A
0.435
0.435
E2f1
M09041_2.00
Mus musculus
NDDGGCGGGRVN
NBYCCCGCCHHN
Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A
0.435
0.435
E2f4
M09037_2.00
Mus musculus
NRDDGGCGGGRMNN
NNKYCCCGCCHHYN
Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A
0.435
0.435
E2F4
M09524_2.00
Homo sapiens
VGCGSGAADH
DHTTCSCGCB
Misc
Heinz et al.(2010)
K562-E2F4_GSE31477
0.435
0.435
E2F4
M10457_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_05
0.435
0.435
E2F4
M10458_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q3
0.435
0.435
E2F4
M10459_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q6
0.435
0.435
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCOI00990100.t1
E2F
698
759
CENSLKAITRKFVKWVARGEAVNLNDAASVLCVSKRRLYDVVNVLEGVGIIEKCGMNKVRMR
HCOI00990100.t2
E2F
713
774
CENSLKAITRKFVKWVARGEAVNLNDAASVLCVSKRRLYDVVNVLEGVGIIEKCGMNKVRMR
Links
Other
E2F
family TFs
Other
Haemonchus contortus
TFs
341 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy