CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PEQ_0000364301
(
Parascaris equorum
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02319 (E2F_TDP)
IPR003316
PEQ_0000364301
T174366_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
E2F4
M02961_2.00
Homo sapiens
AATGGCGCCAAA
TTTGGCGCCATT
SELEX
Jolma et al.(2013)
E2F4_1
0.500
0.500
E2F4
M02962_2.00
Homo sapiens
TTTGGCGCCAAA
TTTGGCGCCAAA
SELEX
Jolma et al.(2013)
E2F4_2
0.500
0.500
E2F4
M04707_2.00
Homo sapiens
NWWKGGCGCCAAAW
WTTTGGCGCCMWWN
SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX
0.500
0.500
efl-1
M08110_2.00
Caenorhabditis elegans
HNHNSGCGSSAAWWN
NWWTTSSCGCSNDND
ChIP-seq
Mathelier et al.(2014)
MA0541.1
0.500
0.500
E2F4
M08109_2.00
Homo sapiens
NSGCGGGARVN
NBYTCCCGCSN
ChIP-seq
Mathelier et al.(2014)
MA0470.1
0.500
0.500
E2F4
M07942_2.00
Homo sapiens
SGCGSGARDNNBNVN
NBNVNNHYTCSCGCS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD
0.500
0.500
E2F4
M07943_2.00
Homo sapiens
SGCGGGARDNNBVVN
NBBVNNHYTCCCGCS
ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD
0.500
0.500
efl-1
M08197_2.00
Caenorhabditis elegans
BGCGSSAAWW
WWTTSSCGCV
ChIP-seq
Contrino et al.(2012)
Mw140
0.500
0.500
E2F4
M09036_2.00
Homo sapiens
VDRGGCGGGRVND
HNBYCCCGCCYHB
Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A
0.500
0.500
E2f4
M09037_2.00
Mus musculus
NRDDGGCGGGRMNN
NNKYCCCGCCHHYN
Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A
0.500
0.500
E2f5
M09042_2.00
Mus musculus
NGCGCSAAAN
NTTTSGCGCN
Misc
Kulakovskiy et al.(2013)
E2F5_MOUSE.H11MO.0.B
0.500
0.500
efl-1
M09526_2.00
Caenorhabditis elegans
WGCAARYGCGCTCYA
TRGAGCGCRYTTGCW
Misc
Heinz et al.(2010)
cElegans-L1-EFL1_modEncode
0.500
0.500
E2F4
M09524_2.00
Homo sapiens
VGCGSGAADH
DHTTCSCGCB
Misc
Heinz et al.(2010)
K562-E2F4_GSE31477
0.500
0.500
E2F4
M10457_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_05
0.500
0.500
E2F4
M10458_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q3
0.500
0.500
E2F4
M10459_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q6
0.500
0.500
E2F1
M02952_2.00
Homo sapiens
WWDGGCGCCAAW
WTTGGCGCCHWW
SELEX
Jolma et al.(2013)
E2F1_1
0.469
0.469
E2F1
M02953_2.00
Homo sapiens
WWKGGCGCCWWW
WWWGGCGCCMWW
SELEX
Jolma et al.(2013)
E2F1_2
0.469
0.469
E2F1
M02954_2.00
Homo sapiens
WWWKGGCGCCMWWW
WWWKGGCGCCMWWW
SELEX
Jolma et al.(2013)
E2F1_3
0.469
0.469
E2F1
M02955_2.00
Homo sapiens
AAWKGGCGCCAWTW
WAWTGGCGCCMWTT
SELEX
Jolma et al.(2013)
E2F1_4
0.469
0.469
E2F1
M04700_2.00
Homo sapiens
NWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWN
SELEX
Yin et al.(2017)
E2F1_FL_HT-SELEX
0.469
0.469
E2F1
M07938_2.00
Homo sapiens
VRRVNRVGCGSGMDS
SHKCSCGCBYNBYYB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F1_UCD
0.469
0.469
E2f
M08196_2.00
Drosophila melanogaster
AAWWBSSCGSCAA
TTGSCGSSVWWTT
ChIP-seq
Contrino et al.(2012)
Mf10
0.469
0.469
E2F1
M09030_2.00
Homo sapiens
NVNDGGCGGGARVN
NBYTCCCGCCHNBN
Misc
Kulakovskiy et al.(2013)
E2F1_HUMAN.H11MO.0.A
0.469
0.469
E2f1
M09041_2.00
Mus musculus
NDDGGCGGGRVN
NBYCCCGCCHHN
Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A
0.469
0.469
E2F1
M09521_2.00
Homo sapiens
NNGGCGGGAA
TTCCCGCCNN
Misc
Heinz et al.(2010)
Hela-E2F1_GSE22478
0.469
0.469
E2F1
M10444_2.00
Homo sapiens
THVGCGCGAAAAHKR
YMDTTTTCGCGCBDA
Transfac
Matys et al.(2006)
V$E2F_01
0.469
0.469
E2F1
M10445_2.00
Homo sapiens
BHKSGCGCSAAA
TTTSGCGCSMDV
Transfac
Matys et al.(2006)
V$E2F_03
0.469
0.469
E2F1
M10446_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_01
0.469
0.469
E2F1
M10447_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_02
0.469
0.469
E2F1
M10448_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3_01
0.469
0.469
E2F1
M10449_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3
0.469
0.469
E2F1
M10450_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_01
0.469
0.469
E2F1
M10451_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_02
0.469
0.469
E2F1
M10452_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4
0.469
0.469
E2F1
M10453_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q6
0.469
0.469
E2F2
M01963_2.00
Tupaia belangeri
WDVGCGCBHW
WDVGCGCBHW
PBM
Weirauch et al.(2014)
pTH9291
0.438
0.438
efl-2
M01966_2.00
Caenorhabditis elegans
NDBGCGSBNN
NNVSCGCVHN
PBM
Weirauch et al.(2014)
pTH5916
0.438
0.438
efl-2
M00662_2.00
Caenorhabditis elegans
NSGCGSNNDN
NHNNSCGCSN
PBM
Narasimhan et al.(2015)
pTH9173
0.438
0.438
E2FC
M06870_2.00
Arabidopsis thaliana
AWDDDGGCGCCAAAR
YTTTGGCGCCHHHWT
Dap-seq
OMalley et al.(2016)
E2FC_col_a
0.438
0.438
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PEQ_0000364301-mRNA-1
E2F
56
92
AEKSLGLLTQRFLRLLQTARSGIVDLNTVGFLSENKN
Links
Other
E2F
family TFs
Other
Parascaris equorum
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MGA
Homo sapiens
ENSG00000174197
D
0.000
MGA
Tupaia belangeri
ENSTBEG00000002010
I
0.000
ENSSTOG00000000653
Ictidomys tridecemlineatus
ENSSTOG00000000653
I
0.000
MGA
Sorex araneus
ENSSARG00000007043
I
0.000
Mga
Rattus norvegicus
ENSRNOG00000006378
I
0.000
MGA
Pteropus vampyrus
ENSPVAG00000013732
I
0.000
MGA
Pan troglodytes
ENSPTRG00000006953
I
0.000
ENSPPYG00000006380
Pongo abelii
ENSPPYG00000006380
I
0.000
MGA
Procavia capensis
ENSPCAG00000013131
I
0.000
MGA
Otolemur garnettii
ENSOGAG00000016028
I
0.000
MGA
Oryctolagus cuniculus
ENSOCUG00000006505
I
0.000
XP_002933783
Xenopus tropicalis
XP_002933783
I
0.000
ENSTSYG00000014605
Tarsius syrichta
ENSTSYG00000014605
I
0.000
MGA
Tursiops truncatus
ENSTTRG00000002514
I
0.000
Pvit_03503
Pogona vitticeps
Pvit_03503
I
0.000
Ogr06446
Ophisaurus gracilis
Ogr06446
I
0.000
Gfo_R014126
Geospiza fortis
Gfo_R014126
I
0.000
ENSP00000219905
Macaca fascicularis
ENSP00000219905
I
0.000
ENSP00000219905-D1
Bos grunniens
ENSP00000219905-D1
I
0.000
Cmyd_10013542
Chelonia mydas
Cmyd_10013542
I
0.000
Afo_R002341
Aptenodytes forsteri
Afo_R002341
I
0.000
Aan_R008874
Calypte anna
Aan_R008874
I
0.000
MGA
Vicugna pacos
ENSVPAG00000006239
I
0.000
ENSOARG00000020404
Ovis aries
ENSOARG00000020404
I
0.000
MGA
Ornithorhynchus anatinus
ENSOANG00000004502
I
0.000
ENSFALG00000006030
Ficedula albicollis
ENSFALG00000006030
I
0.000
MGA
Erinaceus europaeus
ENSEEUG00000004604
I
0.000
MGA
Equus caballus
ENSECAG00000006544
I
0.000
ENSCSAG00000007832
Chlorocebus sabaeus
ENSCSAG00000007832
I
0.000
MGA
Callithrix jacchus
ENSCJAG00000020688
I
0.000
MGA
Choloepus hoffmanni
ENSCHOG00000012044
I
0.000
MGA
Canis familiaris
ENSCAFG00000009662
I
0.000
MGA
Bos taurus
ENSBTAG00000015138
I
0.000
ENSAPLG00000010304
Anas platyrhynchos
ENSAPLG00000010304
I
0.000
MGA
Felis catus
ENSFCAG00000007347
I
0.000
ENSGALG00000008653
Gallus gallus
ENSGALG00000008653
I
0.000
MGA
Gorilla gorilla
ENSGGOG00000001640
I
0.000
ENSNLEG00000003750
Nomascus leucogenys
ENSNLEG00000003750
I
0.000
Mga
Mus musculus
ENSMUSG00000033943
I
0.000
ENSMPUG00000008968
Mustela putorius furo
ENSMPUG00000008968
I
0.000
MGA
Monodelphis domestica
ENSMODG00000000052
I
0.000
MGA
Myotis lucifugus
ENSMLUG00000015227
I
0.000
MGA
Microcebus murinus
ENSMICG00000001788
I
0.000
MGA
Meleagris gallopavo
ENSMGAG00000011293
I
0.000
ENSLOCG00000011689
Lepisosteus oculatus
ENSLOCG00000011689
I
0.000
ENSLACG00000002619
Latimeria chalumnae
ENSLACG00000002619
I
0.000
ENSAMEG00000016587
Ailuropoda melanoleuca
ENSAMEG00000016587
I
0.000