CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold51-EXSNAP2012.35
(
Pristionchus exspectatus
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02319 (E2F_TDP)
IPR003316
scaffold51-EXSNAP2012.35
T174381_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
E2F8
M02959_2.00
Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA
SELEX
Jolma et al.(2013)
E2F8_1
0.440
0.440
E2F8
M04703_2.00
Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW
SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX
0.440
0.440
E2F8
M04704_2.00
Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX
0.440
0.440
E2F7
M02960_2.00
Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW
SELEX
Jolma et al.(2013)
E2F7_1
0.433
0.433
E2F7
M04705_2.00
Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX
0.433
0.433
E2F7
M09033_2.00
Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B
0.433
0.433
E2f7
M09040_2.00
Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C
0.433
0.433
E2F7
M09522_2.00
Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN
Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673
0.433
0.433
E2F7
M04706_2.00
Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW
SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX
0.433
0.433
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold51-EXSNAP2012.35
E2F
92
160
KENSLGLLCQRFIEAMKEATAAEGGNSVHLESVATKMKVEKRRIYDIVNVMEALDAMSKQNKSYYAWHG
scaffold51-EXSNAP2012.35
E2F
260
341
TKNSLAMLCRRFIMVLLANPQDRRRVSLDVASTVLIKDTETEGFDPPSRGRCRRLYDIANVLVAMGIIKKVHYLFGTKKIPL
Links
Other
E2F
family TFs
Other
Pristionchus exspectatus
TFs
99 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PPA21298
Pristionchus pacificus
PPA21298
I
0.993
scaffold884-EXSNAP2012.1
Pristionchus exspectatus
scaffold884-EXSNAP2012.1
I
0.992
TCNE_0000873901
Toxocara canis
TCNE_0000873901
I
0.836
SMUV_0000434101
Syphacia muris
SMUV_0000434101
I
0.821
ASU_04096
Ascaris suum
ASU_04096
I
0.799
ALUE_0000773501
Ascaris lumbricoides
ALUE_0000773501
I
0.799
DICVIV_01764
Dictyocaulus viviparus
DICVIV_01764
I
0.793
HCOI01892600
Haemonchus contortus
HCOI01892600
I
0.793
TELCIR_03927
Teladorsagia circumcincta
TELCIR_03927
I
0.793
ASIM_0001001801
Anisakis simplex
ASIM_0001001801
I
0.778
efl-3
Caenorhabditis elegans
WBGene00009899
I
0.776
CJA26768
Caenorhabditis japonica
CJA26768
I
0.776
CBN23380
Caenorhabditis brenneri
CBN23380
I
0.770
CGOC_0000227901
Cylicostephanus goldi
CGOC_0000227901
N
0.770
CRE01589
Caenorhabditis remanei
CRE01589
I
0.770
CBG00680
Caenorhabditis briggsae
CBG00680
I
0.763
OESDEN_14635
Oesophagostomum dentatum
OESDEN_14635
I
0.762
HPBE_0000610601
Heligmosomoides bakeri
HPBE_0000610601
I
0.756
ANCCAN_04600
Ancylostoma caninum
ANCCAN_04600
I
0.756
ACAC_0000024001
Angiostrongylus cantonensis
ACAC_0000024001
I
0.756
L898_g3621
Steinernema monticolum
L898_g3621
I
0.752
OESDEN_13289
Oesophagostomum dentatum
OESDEN_13289
I
0.741
L893_g19965
Steinernema glaseri
L893_g19965
I
0.720
L892_g1818
Steinernema scapterisci
L892_g1818
I
0.716
L596_g12895
Steinernema carpocapsae
L596_g12895
I
0.706
L889_g28422
Steinernema feltiae
L889_g28422
I
0.701
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0
I
0.693
BXY_1693900
Bursaphelenchus xylophilus
BXY_1693900
I
0.691
Minc04041
Meloidogyne incognita
Minc04041
I
0.684
maker-nMf.1.1.scaf01659-augustus-gene-0.9
Meloidogyne floridensis
maker-nMf.1.1.scaf01659-augustus-gene-0.9
I
0.684
Minc05731
Meloidogyne incognita
Minc05731
I
0.684
MhA1_Contig130.frz3.gene44
Meloidogyne hapla
MhA1_Contig130.frz3.gene44
I
0.679
EVEC_0001263301
Enterobius vermicularis
EVEC_0001263301
N
0.642
SVUK_0001371201
Strongylus vulgaris
SVUK_0001371201
I
0.582
nDi.2.2.2.g08162
Dirofilaria immitis
nDi.2.2.2.g08162
N
0.556
nLs.2.1.2.g03748
Litomosoides sigmodontis
nLs.2.1.2.g03748
N
0.553
WUBG_01805
Wuchereria bancrofti
WUBG_01805
N
0.552
LOAG_07147
Loa loa
LOAG_07147
N
0.552
OFLC_0000212001
Onchocerca flexuosa
OFLC_0000212001
N
0.549
WBGene00247952
Onchocerca volvulus
WBGene00247952
N
0.545
Bm4234
Brugia malayi
Bm4234
N
0.545
nOo.2.0.1.g06441
Onchocerca ochengi
nOo.2.0.1.g06441
N
0.545
DME_0000727201
Dracunculus medinensis
DME_0000727201
I
0.500
TELCIR_22846
Teladorsagia circumcincta
TELCIR_22846
I
0.485
TCLT_0000737401
Thelazia callipaeda
TCLT_0000737401
N
0.481
NECAME_17546
Necator americanus
NECAME_17546
N
0.470
e2f8
Takifugu rubripes
ENSTRUG00000015792
I
0.456
XP_002942881
Xenopus tropicalis
XP_002942881
I
0.449
e2f8
Gasterosteus aculeatus
ENSGACG00000017086
I
0.449
ENSLOCG00000016279
Lepisosteus oculatus
ENSLOCG00000016279
I
0.449
e2f8.L
Xenopus laevis
XB-GENE-1219153
I
0.449
gw.270.22.1
Branchiostoma floridae
gw.270.22.1
I
0.449
ENSPSIG00000008707
Pelodiscus sinensis
ENSPSIG00000008707
I
0.448
Pvit_10252
Pogona vitticeps
Pvit_10252
I
0.448
Tal_R008430
Tyto alba
Tal_R008430
I
0.441
Ogr19156
Ophisaurus gracilis
Ogr19156
I
0.441
Afo_R006642
Aptenodytes forsteri
Afo_R006642
I
0.441
e2f8
Tetraodon nigroviridis
ENSTNIG00000009615
I
0.441
ENSLOCG00000004831
Lepisosteus oculatus
ENSLOCG00000004831
I
0.441
ENSONIG00000007135
Oreochromis niloticus
ENSONIG00000007135
I
0.441
E2F8
Equus caballus
ENSECAG00000016457
I
0.441
ENSGMOG00000019253
Gadus morhua
ENSGMOG00000019253
I
0.441
Aan_R006648
Calypte anna
Aan_R006648
I
0.441
E2F8
Pan troglodytes
ENSPTRG00000003435
I
0.440
Alligator_sinensis_CCG013028.1
Alligator sinensis
Alligator_sinensis_CCG013028.1
I
0.440
Alligator_sinensis_CCG013028.2
Alligator sinensis
Alligator_sinensis_CCG013028.2
I
0.440
E2F8
Tursiops truncatus
ENSTTRG00000005707
I
0.440
Sakowv30003251m.g
Saccoglossus kowalevskii
Sakowv30003251m.g
I
0.438
Alligator_sinensis_CCG013467.1
Alligator sinensis
Alligator_sinensis_CCG013467.1
I
0.434
E2F8
Monodelphis domestica
ENSMODG00000009029
I
0.434
Myotis_brandtii_E2F7_10034114
Myotis brandtii
Myotis_brandtii_E2F7_10034114
I
0.434
ENSNLEG00000017803
Nomascus leucogenys
ENSNLEG00000017803
I
0.434
ENSAMXG00000016864
Astyanax mexicanus
ENSAMXG00000016864
I
0.434
E2F8
Macaca mulatta
ENSMMUG00000010853
I
0.434
E2F7
Myotis lucifugus
ENSMLUG00000012116
I
0.434
E2F8
Homo sapiens
ENSG00000129173
D
0.434
ENSCSAG00000005093
Chlorocebus sabaeus
ENSCSAG00000005093
I
0.434
ENSAPLG00000009091
Anas platyrhynchos
ENSAPLG00000009091
I
0.434
ENSPANG00000005225
Papio anubis
ENSPANG00000005225
I
0.434
ENSPPYG00000003424
Pongo abelii
ENSPPYG00000003424
I
0.434
Cmyd_10011734
Chelonia mydas
Cmyd_10011734
I
0.434
Cmyd_10016427
Chelonia mydas
Cmyd_10016427
I
0.434
ENSP00000379463
Macaca fascicularis
ENSP00000379463
I
0.434
Gfo_R003976
Geospiza fortis
Gfo_R003976
I
0.434
ENSDORG00000003404
Dipodomys ordii
ENSDORG00000003404
I
0.434
Brh_R011115
Buceros rhinoceros
Brh_R011115
I
0.434
ENSPSIG00000012629
Pelodiscus sinensis
ENSPSIG00000012629
I
0.434
CapteG198117
Capitella teleta
CapteG198117
I
0.434
E2F7
Anolis carolinensis
ENSACAG00000005414
I
0.434
ENSSHAG00000018372
Sarcophilus harrisii
ENSSHAG00000018372
I
0.434
E2F7
Dasypus novemcinctus
ENSDNOG00000001580
I
0.433
E2f8
Mus musculus
ENSMUSG00000046179
I
0.433
ENSSHAG00000002919
Sarcophilus harrisii
ENSSHAG00000002919
I
0.433
LotgiG168338
Lottia gigantea
LotgiG168338
I
0.433
E2F7
Oryctolagus cuniculus
ENSOCUG00000004932
I
0.433
E2F8
Meleagris gallopavo
ENSMGAG00000002303
I
0.433
ENSLACG00000016113
Latimeria chalumnae
ENSLACG00000016113
I
0.433
E2F7
Loxodonta africana
ENSLAFG00000017902
I
0.433
ENSFALG00000010433
Ficedula albicollis
ENSFALG00000010433
I
0.433