CGI_10023990 (Crassostrea gigas)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF16422 (COE1_DBD) (none) CGI_10023990 T174467_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
EBF3
M10461_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF_Q6
0.805 0.805
Ebf1
M09045_2.00
Mus musculus
DBYCCCWRGGGAV

BTCCCYWGGGRVH
Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A
0.801 0.801
Ebf1
M09527_2.00
Mus musculus
DBTCCCHDGGGA

TCCCHDGGGAVH
Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978
0.801 0.801
Ebf1
M10469_2.00
Mus musculus
VYMHVYYCYYBRGGGAVTHKHB

VDMDABTCCCYVRRGRRBDKRB
Transfac
Matys et al.(2006)
V$OLF1_01
0.801 0.801
EBF4
M10460_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_02
0.796 0.796
Ebf4
M10468_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_01
0.792 0.792
kn
M03721_2.00
Drosophila melanogaster
BWATTCCCHDGGGAATWV

BWATTCCCHDGGGAATWV
SELEX
Nitta et al.(2015)
kn_1
0.774 0.774
Ebf2
M10467_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COE2_01
0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC33090 EBF1 22 248

Links

Other EBF1 family TFs
Other Crassostrea gigas TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_05793 Capronia coronata A1O1_05793 N 0.000
A1O3_03567 Capronia epimyces A1O3_03567 N 0.000
A1O5_06590 Cladophialophora psammophila A1O5_06590 N 0.000
AOL_s00078g84 Arthrobotrys oligospora AOL_s00078g84 N 0.000
Bcin01g06570 Botrytis cinerea Bcin01g06570 N 0.000
COCC4DRAFT_190319 Bipolaris maydis COCC4DRAFT_190319 N 0.000
COCCADRAFT_24165 Bipolaris zeicola COCCADRAFT_24165 N 0.000
COCMIDRAFT_89586 Bipolaris oryzae COCMIDRAFT_89586 N 0.000
COCSADRAFT_339916 Bipolaris sorokiniana COCSADRAFT_339916 N 0.000
COCVIDRAFT_94626 Bipolaris victoriae COCVIDRAFT_94626 N 0.000
estExt_Genewise1Plus.C_30684 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_30684 N 0.000
GMDG_00068 Pseudogymnoascus destructans GMDG_00068 N 0.000
GSTUM_00010077001 Tuber melanosporum GSTUM_00010077001 N 0.000
H072_5541 Dactylellina haptotyla H072_5541 N 0.000
LEMA_P026340.1 Leptosphaeria maculans LEMA_P026340.1 N 0.000
MPH_00536 Macrophomina phaseolina MPH_00536 N 0.000
OIDMADRAFT_179337 Oidiodendron maius OIDMADRAFT_179337 N 0.000
PTRG_07876 Pyrenophora triticirepentis PTRG_07876 N 0.000
PTT_10593 Pyrenophora teres PTT_10593 N 0.000
PV04_01162 Capronia semiimmersa PV04_01162 N 0.000
PV05_11914 Exophiala xenobiotica PV05_11914 N 0.000
PV07_02098 Cladophialophora immunda PV07_02098 N 0.000
PV08_05573 Exophiala spinifera PV08_05573 N 0.000
PV09_01633 Verruconis gallopava PV09_01633 N 0.000
PVAR5_1950 Byssochlamys spectabilis PVAR5_1950 N 0.000
SBOR_0727 Sclerotinia borealis SBOR_0727 N 0.000
SETTUDRAFT_106188 Setosphaeria turcica SETTUDRAFT_106188 N 0.000
SNOG_04741 Phaeosphaeria nodorum SNOG_04741 N 0.000
SNOG_04741 Stagonospora nodorum SNOG_04741 N 0.000
UCRNP2_4518 Neofusicoccum parvum UCRNP2_4518 N 0.000
VDBG_03066 Verticillium alfalfae VDBG_03066 N 0.000
VDBG_03066 Verticillium albo atrum VDBG_03066 N 0.000
W97_03506 Coniosporium apollinis W97_03506 N 0.000
Z517_07575 Fonsecaea pedrosoi Z517_07575 N 0.000
Z517_07750 Fonsecaea pedrosoi Z517_07750 N 0.000
Z518_04505 Rhinocladiella mackenziei Z518_04505 N 0.000
Z519_09074 Cladophialophora bantiana Z519_09074 N 0.000