ebf3a (Gasterosteus aculeatus)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF16422 (COE1_DBD) (none) ENSGACG00000009548 T174556_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
EBF3
M10461_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF_Q6
0.944 0.944
Ebf1
M09045_2.00
Mus musculus
DBYCCCWRGGGAV

BTCCCYWGGGRVH
Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A
0.909 0.909
Ebf1
M09527_2.00
Mus musculus
DBTCCCHDGGGA

TCCCHDGGGAVH
Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978
0.909 0.909
Ebf1
M10469_2.00
Mus musculus
VYMHVYYCYYBRGGGAVTHKHB

VDMDABTCCCYVRRGRRBDKRB
Transfac
Matys et al.(2006)
V$OLF1_01
0.909 0.909
EBF4
M10460_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_02
0.879 0.879
Ebf4
M10468_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_01
0.874 0.874
Ebf2
M10467_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COE2_01
0.866 0.866
kn
M03721_2.00
Drosophila melanogaster
BWATTCCCHDGGGAATWV

BWATTCCCHDGGGAATWV
SELEX
Nitta et al.(2015)
kn_1
0.740 0.740
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000012611 EBF1 16 246
ENSGACP00000012623 EBF1 16 246

Links

Other EBF1 family TFs
Other Gasterosteus aculeatus TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ATWHY2 Populus trichocarpa POPTR_0003s04700 N 0.000
ATWHY2 Arabidopsis lyrata scaffold_202038.1 N 0.000
Bo6g112840 Brassica oleracea Bo6g112840 N 0.000
Bostr.10273s0220 Boechera stricta Bostr.10273s0220 N 0.000
Bra016150 Brassica rapa Bra016150 N 0.000
Cagra.0147s0016 Capsella grandiflora Cagra.0147s0016 N 0.000
Carubv10020880m.g Capsella rubella Carubv10020880m.g N 0.000
cassava24783.valid.m1 Manihot esculenta cassava24783.valid.m1 N 0.000
chr1.LjT14G19.90.nc Lotus japonicus chr1.LjT14G19.90.nc N 0.000
Eucgr.K01091 Eucalyptus grandis Eucgr.K01091 N 0.000
evm.TU.supercontig_249.9 Carica papaya evm.TU.supercontig_249.9 N 0.000
GLYMA03G41270 Glycine max GLYMA03G41270 N 0.000
GLYMA19G43880 Glycine max GLYMA19G43880 N 0.000
Gorai.004G266000 Gossypium raimondii Gorai.004G266000 N 0.000
Lus10017892.g Linum usitatissimum Lus10017892.g N 0.000
Lus10035067.g Linum usitatissimum Lus10035067.g N 0.000
MDP0000168614 Malus domestica MDP0000168614 N 0.000
mgf015710m Mimulus guttatus mgf015710m N 0.000
MLOC_19666 Hordeum vulgare MLOC_19666 N 0.000
MTR_7g116270 Medicago truncatula MTR_7g116270 N 0.000
orange1.1g026312m.g Citrus sinensis orange1.1g026312m.g N 0.000
PGSC0003DMG400022930 Solanum tuberosum PGSC0003DMG400022930 N 0.000
Pm022821 Prunus mume Pm022821 N 0.000
PRUPE_ppa011529mg Prunus persica PRUPE_ppa011529mg N 0.000
SapurV1A.0002s0060 Salix purpurea SapurV1A.0002s0060 N 0.000
Solyc11g044750.1 Solanum lycopersicum Solyc11g044750.1 N 0.000
Thhalv10019058m.g Eutrema salsugineum Thhalv10019058m.g N 0.000