ENSLACG00000017271 (Latimeria chalumnae)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF16422 (COE1_DBD) (none) ENSLACG00000017271 T174576_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Ebf2
M10467_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COE2_01
1.000 1.000
EBF3
M10461_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF_Q6
0.870 0.870
EBF2
M10466_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COE2_02
1.000 1.000
Ebf1
M09045_2.00
Mus musculus
DBYCCCWRGGGAV

BTCCCYWGGGRVH
Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A
0.968 0.968
Ebf1
M09527_2.00
Mus musculus
DBTCCCHDGGGA

TCCCHDGGGAVH
Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978
0.968 0.968
Ebf1
M10469_2.00
Mus musculus
VYMHVYYCYYBRGGGAVTHKHB

VDMDABTCCCYVRRGRRBDKRB
Transfac
Matys et al.(2006)
V$OLF1_01
0.844 0.844
Ebf4
M10468_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_01
0.818 0.818
EBF4
M10460_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_02
0.814 0.814
kn
M03721_2.00
Drosophila melanogaster
BWATTCCCHDGGGAATWV

BWATTCCCHDGGGAATWV
SELEX
Nitta et al.(2015)
kn_1
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000019640 EBF1 1 63
ENSLACP00000019641 EBF1 17 247

Links

Other EBF1 family TFs
Other Latimeria chalumnae TFs

381 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00045p00146180 Amborella trichopoda AMTR_s00045p00146180 I 0.000
AMTR_s00079p00143780 Amborella trichopoda AMTR_s00079p00143780 I 0.000
Aquca_003_00245 Aquilegia coerulea Aquca_003_00245 I 0.000
AtMYB50 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003728 I 0.000
AtMYB50 Arabidopsis thaliana AT1G57560 I 0.000
ATMYB86 Arabidopsis lyrata fgenesh2_kg.6__2630__AT5G26660.1 I 0.000
BGIOSGA001460 Oryza indica BGIOSGA001460 I 0.000
BGIOSGA001872 Oryza indica BGIOSGA001872 I 0.000
BGIOSGA004306 Oryza indica BGIOSGA004306 I 0.000
BGIOSGA010658 Oryza indica BGIOSGA010658 I 0.000
BGIOSGA019160 Oryza indica BGIOSGA019160 I 0.000
BGIOSGA026208 Oryza indica BGIOSGA026208 I 0.000
Bo2g156300 Brassica oleracea Bo2g156300 I 0.000
Bo7g095130 Brassica oleracea Bo7g095130 I 0.000
Bo8g111090 Brassica oleracea Bo8g111090 I 0.000
Bo9g004210 Brassica oleracea Bo9g004210 I 0.000
Bo9g010860 Brassica oleracea Bo9g010860 I 0.000
Bostr.25494s0012 Boechera stricta Bostr.25494s0012 I 0.000
Bostr.29827s0161 Boechera stricta Bostr.29827s0161 I 0.000
Bostr.30057s0004 Boechera stricta Bostr.30057s0004 I 0.000
Bostr.4825s0008 Boechera stricta Bostr.4825s0008 I 0.000
Bra020016 Brassica rapa Bra020016 I 0.000
Bra030783 Brassica rapa Bra030783 I 0.000
Bra031669 Brassica rapa Bra031669 I 0.000
Bra036317 Brassica rapa Bra036317 I 0.000
Bra036588 Brassica rapa Bra036588 I 0.000
BRADI1G20250 Brachypodium distachyon BRADI1G20250 I 0.000
BRADI1G61397 Brachypodium distachyon BRADI1G61397 I 0.000
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.000
BRADI2G36730 Brachypodium distachyon BRADI2G36730 I 0.000
BRADI2G40620 Brachypodium distachyon BRADI2G40620 I 0.000
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I 0.000
Cagra.0334s0011 Capsella grandiflora Cagra.0334s0011 I 0.000
Cagra.23492s0001 Capsella grandiflora Cagra.23492s0001 I 0.000
Cagra.4395s0139 Capsella grandiflora Cagra.4395s0139 I 0.000
Carubv10001224m.g Capsella rubella Carubv10001224m.g I 0.000
Carubv10001308m.g Capsella rubella Carubv10001308m.g I 0.000
Carubv10009497m.g Capsella rubella Carubv10009497m.g I 0.000
cassava12868.valid.m1 Manihot esculenta cassava12868.valid.m1 I 0.000
cassava17679.valid.m1 Manihot esculenta cassava17679.valid.m1 I 0.000
cassava33008.m1 Manihot esculenta cassava33008.m1 I 0.000
Ca_01055 Cicer arietinum Ca_01055 I 0.000
Ca_01072 Cicer arietinum Ca_01072 I 0.000
Ca_03564 Cicer arietinum Ca_03564 I 0.000
Ca_03589 Cicer arietinum Ca_03589 I 0.000
chr1.CM0122.20.nc Lotus japonicus chr1.CM0122.20.nc I 0.000
chr5.CM0048.130.nc Lotus japonicus chr5.CM0048.130.nc I 0.000
chr5.CM0048.320.nd Lotus japonicus chr5.CM0048.320.nd I 0.000
Ciclev10020144m.g Citrus clementina Ciclev10020144m.g I 0.000
Cla001724 Citrullus lanatus Cla001724 I 0.000
Cla005219 Citrullus lanatus Cla005219 I 0.000
Cla012793 Citrullus lanatus Cla012793 I 0.000
Cla020303 Citrullus lanatus Cla020303 I 0.000
Cucsa.051050 Cucumis sativus Cucsa.051050 I 0.000
Cucsa.090310 Cucumis sativus Cucsa.090310 I 0.000
Cucsa.340960 Cucumis sativus Cucsa.340960 I 0.000
Eucgr.A00996 Eucalyptus grandis Eucgr.A00996 I 0.000
Eucgr.B02197 Eucalyptus grandis Eucgr.B02197 I 0.000
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I 0.000
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.000
Eucgr.K00555 Eucalyptus grandis Eucgr.K00555 I 0.000
evm.TU.supercontig_57.32 Carica papaya evm.TU.supercontig_57.32 I 0.000
e_gw1.24.66.1 Physcomitrella patens e_gw1.24.66.1 I 0.000
F775_01821 Aegilops tauschii F775_01821 I 0.000
F775_17110 Aegilops tauschii F775_17110 I 0.000
F775_18488 Aegilops tauschii F775_18488 I 0.000
F775_28584 Aegilops tauschii F775_28584 I 0.000
fgenesh1_pg.scaffold_189000016 Physcomitrella patens fgenesh1_pg.scaffold_189000016 I 0.000
gene22961-v1.0-hybrid Fragaria vesca gene22961-v1.0-hybrid I 0.000
GLYMA02G00960 Glycine max GLYMA02G00960 I 0.000
GLYMA03G38410 Glycine max GLYMA03G38410 I 0.000
GLYMA03G38660 Glycine max GLYMA03G38660 I 0.000
GLYMA09G25655 Glycine max GLYMA09G25655 I 0.000
GLYMA10G27940 Glycine max GLYMA10G27940 I 0.000
GLYMA10G28250 Glycine max GLYMA10G28250 I 0.000
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.000
GLYMA19G41010 Glycine max GLYMA19G41010 I 0.000
GLYMA19G41250 Glycine max GLYMA19G41250 I 0.000
GLYMA20G22230 Glycine max GLYMA20G22230 I 0.000
Gorai.001G148500 Gossypium raimondii Gorai.001G148500 I 0.000
Gorai.004G147600 Gossypium raimondii Gorai.004G147600 I 0.000
Gorai.007G118200 Gossypium raimondii Gorai.007G118200 I 0.000
Gorai.008G133700 Gossypium raimondii Gorai.008G133700 I 0.000
Gorai.008G277900 Gossypium raimondii Gorai.008G277900 I 0.000
GRMZM2G017520 Zea mays GRMZM2G017520 I 0.000
GRMZM2G064744 Zea mays GRMZM2G064744 I 0.000
GRMZM2G088783 Zea mays GRMZM2G088783 I 0.000
GRMZM2G127490 Zea mays GRMZM2G127490 I 0.000
GRMZM2G147698 Zea mays GRMZM2G147698 I 0.000
GRMZM2G150841 Zea mays GRMZM2G150841 I 0.000
GRMZM2G171781 Zea mays GRMZM2G171781 I 0.000
GSMUA_Achr11G00430_001 Musa acuminata GSMUA_Achr11G00430_001 I 0.000
GSMUA_Achr11G15910_001 Musa acuminata GSMUA_Achr11G15910_001 I 0.000
GSMUA_Achr1G18990_001 Musa acuminata GSMUA_Achr1G18990_001 I 0.000
GSMUA_Achr1G25120_001 Musa acuminata GSMUA_Achr1G25120_001 I 0.000
GSMUA_Achr2G01830_001 Musa acuminata GSMUA_Achr2G01830_001 I 0.000
GSMUA_Achr2G07930_001 Musa acuminata GSMUA_Achr2G07930_001 I 0.000
GSMUA_Achr2G18440_001 Musa acuminata GSMUA_Achr2G18440_001 I 0.000
GSMUA_Achr3G12200_001 Musa acuminata GSMUA_Achr3G12200_001 I 0.000
GSMUA_Achr3G24580_001 Musa acuminata GSMUA_Achr3G24580_001 I 0.000
GSMUA_Achr4G19560_001 Musa acuminata GSMUA_Achr4G19560_001 I 0.000
GSMUA_Achr5G18400_001 Musa acuminata GSMUA_Achr5G18400_001 I 0.000
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I 0.000
GSMUA_Achr7G17250_001 Musa acuminata GSMUA_Achr7G17250_001 I 0.000
GSMUA_Achr8G18730_001 Musa acuminata GSMUA_Achr8G18730_001 I 0.000
GSMUA_AchrUn_randomG00040_001 Musa acuminata GSMUA_AchrUn_randomG00040_001 I 0.000
GSMUA_AchrUn_randomG22350_001 Musa acuminata GSMUA_AchrUn_randomG22350_001 N 0.000
gw1.149.61.1 Physcomitrella patens gw1.149.61.1 I 0.000
gw1.277.32.1 Physcomitrella patens gw1.277.32.1 I 0.000
LjSGA_026563.1 Lotus japonicus LjSGA_026563.1 I 0.000
LPERR01G10930 Leersia perrieri LPERR01G10930 I 0.000
LPERR01G24370 Leersia perrieri LPERR01G24370 I 0.000
LPERR03G16350 Leersia perrieri LPERR03G16350 I 0.000
LPERR05G02400 Leersia perrieri LPERR05G02400 I 0.000
LPERR07G20400 Leersia perrieri LPERR07G20400 I 0.000
Lus10031758.g Linum usitatissimum Lus10031758.g I 0.000
Lus10038022.g Linum usitatissimum Lus10038022.g I 0.000
MDP0000175918 Malus domestica MDP0000175918 I 0.000
MDP0000601420 Malus domestica MDP0000601420 I 0.000
MDP0000653903 Malus domestica MDP0000653903 I 0.000
MDP0000932804 Malus domestica MDP0000932804 I 0.000
mgf003709m Mimulus guttatus mgf003709m I 0.000
mgf024107m Mimulus guttatus mgf024107m I 0.000
MLOC_18177 Hordeum vulgare MLOC_18177 I 0.000
MLOC_37780 Hordeum vulgare MLOC_37780 I 0.000
MLOC_59663 Hordeum vulgare MLOC_59663 I 0.000
MLOC_6156 Hordeum vulgare MLOC_6156 I 0.000
MTR_1g085040 Medicago truncatula MTR_1g085040 I 0.000
MTR_1g085640 Medicago truncatula MTR_1g085640 I 0.000
MTR_4g485530 Medicago truncatula MTR_4g485530 I 0.000
MTR_7g110830 Medicago truncatula MTR_7g110830 I 0.000
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.000
MTR_8g017500 Medicago truncatula MTR_8g017500 I 0.000
MYB55 Arabidopsis thaliana AT4G01680 D 0.000
MYB55 Arabidopsis lyrata fgenesh2_kg.6__3543__AT4G01680.1 I 0.000
MYB61 Arabidopsis thaliana AT1G09540 D 0.000
MYB61 Arabidopsis lyrata scaffold_100991.1 I 0.000
MYB83 Vitis vinifera VIT_13s0064g00960 I 0.000
MYB86 Arabidopsis thaliana AT5G26660 I 0.000
OB01G21720 Oryza brachyantha OB01G21720 I 0.000
OB01G37410 Oryza brachyantha OB01G37410 I 0.000
OB03G28290 Oryza brachyantha OB03G28290 I 0.000
OB05G12630 Oryza brachyantha OB05G12630 I 0.000
OBART01G11910 Oryza barthii OBART01G11910 I 0.000
OBART05G02690 Oryza barthii OBART05G02690 I 0.000
OGLUM01G13340 Oryza glumaepatula OGLUM01G13340 I 0.000
OGLUM03G19500 Oryza glumaepatula OGLUM03G19500 I 0.000
OGLUM05G02680 Oryza glumaepatula OGLUM05G02680 I 0.000
OGLUM07G23470 Oryza glumaepatula OGLUM07G23470 I 0.000
OLONG_008660 Oryza longistaminata OLONG_008660 I 0.000
OLONG_008768 Oryza longistaminata OLONG_008768 I 0.000
OLONG_014417 Oryza longistaminata OLONG_014417 I 0.000
OMERI03G17220 Oryza meridionalis OMERI03G17220 I 0.000
OMERI05G02610 Oryza meridionalis OMERI05G02610 I 0.000
OMERI07G19830 Oryza meridionalis OMERI07G19830 I 0.000
ONIVA01G14120 Oryza nivara ONIVA01G14120 I 0.000
ONIVA02G07540 Oryza nivara ONIVA02G07540 I 0.000
ONIVA04G28760 Oryza nivara ONIVA04G28760 I 0.000
ONIVA05G02580 Oryza nivara ONIVA05G02580 I 0.000
OPUNC01G11600 Oryza punctata OPUNC01G11600 I 0.000
OPUNC01G19230 Oryza punctata OPUNC01G19230 I 0.000
OPUNC01G28160 Oryza punctata OPUNC01G28160 I 0.000
OPUNC03G17950 Oryza punctata OPUNC03G17950 I 0.000
OPUNC05G02540 Oryza punctata OPUNC05G02540 I 0.000
OPUNC07G22080 Oryza punctata OPUNC07G22080 I 0.000
orange1.1g013300m.g Citrus sinensis orange1.1g013300m.g I 0.000
orange1.1g014135m.g Citrus sinensis orange1.1g014135m.g I 0.000
ORGLA01G0100400 Oryza glaberrima ORGLA01G0100400 I 0.000
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I 0.000
ORGLA03G0178400 Oryza glaberrima ORGLA03G0178400 I 0.000
ORGLA05G0025500 Oryza glaberrima ORGLA05G0025500 I 0.000
ORGLA07G0264800 Oryza glaberrima ORGLA07G0264800 I 0.000
ORUFI01G12800 Oryza rufipogon ORUFI01G12800 I 0.000
ORUFI01G21210 Oryza rufipogon ORUFI01G21210 I 0.000
ORUFI05G02790 Oryza rufipogon ORUFI05G02790 I 0.000
ORUFI07G24600 Oryza rufipogon ORUFI07G24600 I 0.000
ORUFI09G18880 Oryza rufipogon ORUFI09G18880 I 0.000
OS01G0285300 Oryza sativa OS01G0285300 I 0.000
OS01G0709000 Oryza sativa OS01G0709000 I 0.000
OS03G0371800 Oryza sativa OS03G0371800 I 0.000
OS05G0140100 Oryza sativa OS05G0140100 I 0.000
Pavir.Ea01054 Panicum virgatum Pavir.Ea01054 I 0.000
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I 0.000
Pavir.Eb01178 Panicum virgatum Pavir.Eb01178 I 0.000
Pavir.J03230 Panicum virgatum Pavir.J03230 I 0.000
Pavir.J18139 Panicum virgatum Pavir.J18139 I 0.000
Pavir.J20716 Panicum virgatum Pavir.J20716 I 0.000
Pavir.J21520 Panicum virgatum Pavir.J21520 I 0.000
Pavir.J31344 Panicum virgatum Pavir.J31344 I 0.000
Pavir.J40848 Panicum virgatum Pavir.J40848 I 0.000
PDK_20s1308492g002 Phoenix dactylifera PDK_20s1308492g002 N 0.000
PGSC0003DMG400015767 Solanum tuberosum PGSC0003DMG400015767 I 0.000
PGSC0003DMG400018279 Solanum tuberosum PGSC0003DMG400018279 I 0.000
PK03176.1 Cannabis sativa PK03176.1 I 0.000
Pm003267 Prunus mume Pm003267 I 0.000
Pm012272 Prunus mume Pm012272 I 0.000
Pm025103 Prunus mume Pm025103 I 0.000
POPTR_0002s18700 Populus trichocarpa POPTR_0002s18700 I 0.000
POPTR_0005s00340 Populus trichocarpa POPTR_0005s00340 I 0.000
POPTR_0010s00690 Populus trichocarpa POPTR_0010s00690 I 0.000
POPTR_0013s00290 Populus trichocarpa POPTR_0013s00290 I 0.000
POPTR_0014s10680 Populus trichocarpa POPTR_0014s10680 I 0.000
PRUPE_ppa019522mg Prunus persica PRUPE_ppa019522mg I 0.000
PRUPE_ppa019718mg Prunus persica PRUPE_ppa019718mg I 0.000
SapurV1A.0264s0440 Salix purpurea SapurV1A.0264s0440 I 0.000
SapurV1A.0321s0070 Salix purpurea SapurV1A.0321s0070 I 0.000
SapurV1A.0442s0250 Salix purpurea SapurV1A.0442s0250 I 0.000
SapurV1A.1016s0030 Salix purpurea SapurV1A.1016s0030 I 0.000
SapurV1A.1077s0040 Salix purpurea SapurV1A.1077s0040 I 0.000
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.000
SapurV1A.3474s0020 Salix purpurea SapurV1A.3474s0020 I 0.000
Sb01g034270 Sorghum bicolor Sb01g034270 I 0.000
Sb02g040480 Sorghum bicolor Sb02g040480 I 0.000
Sb03g011640 Sorghum bicolor Sb03g011640 I 0.000
Sb03g024500 Sorghum bicolor Sb03g024500 I 0.000
Sb03g032600 Sorghum bicolor Sb03g032600 I 0.000
Sb09g003100 Sorghum bicolor Sb09g003100 I 0.000
SELMODRAFT_437219 Selaginella moellendorffii SELMODRAFT_437219 I 0.000
Si001565m.g Setaria italica Si001565m.g I 0.000
Si002220m.g Setaria italica Si002220m.g I 0.000
Si002319m.g Setaria italica Si002319m.g I 0.000
Si022113m.g Setaria italica Si022113m.g I 0.000
Si029872m.g Setaria italica Si029872m.g I 0.000
Si036638m.g Setaria italica Si036638m.g I 0.000
Solyc01g102340.2 Solanum lycopersicum Solyc01g102340.2 I 0.000
Solyc10g044680.1 Solanum lycopersicum Solyc10g044680.1 I 0.000
TCM_004965 Theobroma cacao TCM_004965 I 0.000
TCM_026853 Theobroma cacao TCM_026853 I 0.000
Thhalv10004450m.g Eutrema salsugineum Thhalv10004450m.g I 0.000
Thhalv10008000m.g Eutrema salsugineum Thhalv10008000m.g I 0.000
Thhalv10023601m.g Eutrema salsugineum Thhalv10023601m.g I 0.000
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I 0.000
Thhalv10028864m.g Eutrema salsugineum Thhalv10028864m.g I 0.000
TRAES3BF071400020CFD_g Triticum aestivum TRAES3BF071400020CFD_g I 0.000
Traes_1AS_1EE692FDC Triticum aestivum Traes_1AS_1EE692FDC I 0.000
Traes_1BS_92EA1F290 Triticum aestivum Traes_1BS_92EA1F290 I 0.000
Traes_1DS_5BAD8947E Triticum aestivum Traes_1DS_5BAD8947E I 0.000
Traes_2AS_731C703DE Triticum aestivum Traes_2AS_731C703DE I 0.000
Traes_2BS_E1E541767 Triticum aestivum Traes_2BS_E1E541767 I 0.000
Traes_2DS_3569AEDFB Triticum aestivum Traes_2DS_3569AEDFB I 0.000
Traes_3AL_E3BF20F0D Triticum aestivum Traes_3AL_E3BF20F0D I 0.000
Traes_3DL_46F83C41D Triticum aestivum Traes_3DL_46F83C41D N 0.000
Traes_7AL_0BCF482E8 Triticum aestivum Traes_7AL_0BCF482E8 I 0.000
Traes_7AS_2EE7C2628 Triticum aestivum Traes_7AS_2EE7C2628 I 0.000
Traes_7DL_AD4395F8F Triticum aestivum Traes_7DL_AD4395F8F I 0.000
TRIUR3_20789 Triticum urartu TRIUR3_20789 I 0.000
TRIUR3_25230 Triticum urartu TRIUR3_25230 I 0.000
TRIUR3_27020 Triticum urartu TRIUR3_27020 I 0.000
VIT_07s0005g02480 Vitis vinifera VIT_07s0005g02480 I 0.000
VIT_14s0060g00240 Vitis vinifera VIT_14s0060g00240 I 0.000