TCLT_0000613901 (Thelazia callipaeda)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) TCLT_0000613901 T174975_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
kn
M03721_2.00
Drosophila melanogaster
BWATTCCCHDGGGAATWV

BWATTCCCHDGGGAATWV
SELEX
Nitta et al.(2015)
kn_1
0.792 0.792
Ebf4
M10468_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_01
0.792 0.792
EBF4
M10460_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_02
0.792 0.792
EBF3
M10461_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF_Q6
0.792 0.792
Ebf1
M09045_2.00
Mus musculus
DBYCCCWRGGGAV

BTCCCYWGGGRVH
Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A
0.787 0.787
Ebf1
M09527_2.00
Mus musculus
DBTCCCHDGGGA

TCCCHDGGGAVH
Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978
0.787 0.787
Ebf1
M10469_2.00
Mus musculus
VYMHVYYCYYBRGGGAVTHKHB

VDMDABTCCCYVRRGRRBDKRB
Transfac
Matys et al.(2006)
V$OLF1_01
0.787 0.787
Ebf2
M10467_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COE2_01
0.782 0.782
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TCLT_0000613901-mRNA-1 EBF1 3 204

Links

Other EBF1 family TFs
Other Thelazia callipaeda TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30190.m010825 Ricinus communis 30190.m010825 I 0.000
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.000
Aquca_037_00132 Aquilegia coerulea Aquca_037_00132 I 0.000
ERF061 Arabidopsis thaliana AT1G64380 I 0.000
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.000
BGIOSGA017525 Oryza indica BGIOSGA017525 N 0.000
Bo9g030900 Brassica oleracea Bo9g030900 I 0.000
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.000
Bostr.29223s0053 Boechera stricta Bostr.29223s0053 I 0.000
Bra027697 Brassica rapa Bra027697 I 0.000
BRADI2G15847 Brachypodium distachyon BRADI2G15847 N 0.000
Cagra.0062s0002 Capsella grandiflora Cagra.0062s0002 I 0.000
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I 0.000
Carubv10020622m.g Capsella rubella Carubv10020622m.g I 0.000
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.000
cassava42814.valid.m1 Manihot esculenta cassava42814.valid.m1 I 0.000
Ca_15031 Cicer arietinum Ca_15031 I 0.000
chr2.CM0060.390.nc Lotus japonicus chr2.CM0060.390.nc I 0.000
Ciclev10021265m.g Citrus clementina Ciclev10021265m.g I 0.000
Cla011093 Citrullus lanatus Cla011093 I 0.000
Cla011559 Citrullus lanatus Cla011559 I 0.000
Cucsa.303840 Cucumis sativus Cucsa.303840 I 0.000
Eucgr.E00857 Eucalyptus grandis Eucgr.E00857 I 0.000
evm.TU.supercontig_79.43 Carica papaya evm.TU.supercontig_79.43 I 0.000
fgenesh2_kg.2__42__AT1G64380.1 Arabidopsis lyrata fgenesh2_kg.2__42__AT1G64380.1 I 0.000
gene32084-v1.0-hybrid Fragaria vesca gene32084-v1.0-hybrid I 0.000
GLYMA01G43450 Glycine max GLYMA01G43450 I 0.000
GLYMA11G02050 Glycine max GLYMA11G02050 I 0.000
Gorai.004G133800 Gossypium raimondii Gorai.004G133800 I 0.000
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.000
Gorai.007G026200 Gossypium raimondii Gorai.007G026200 N 0.000
Gorai.007G240700 Gossypium raimondii Gorai.007G240700 I 0.000
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.000
GRMZM2G100982 Zea mays GRMZM2G100982 I 0.000
GRMZM5G846057 Zea mays GRMZM5G846057 I 0.000
GSMUA_Achr1G27990_001 Musa acuminata GSMUA_Achr1G27990_001 N 0.000
LPERR05G22130 Leersia perrieri LPERR05G22130 N 0.000
Lus10001898.g Linum usitatissimum Lus10001898.g I 0.000
Lus10003889.g Linum usitatissimum Lus10003889.g I 0.000
MDP0000292965 Malus domestica MDP0000292965 I 0.000
MDP0000861708 Malus domestica MDP0000861708 I 0.000
mgf016403m Mimulus guttatus mgf016403m I 0.000
mgf021167m Mimulus guttatus mgf021167m I 0.000
MLOC_53577 Hordeum vulgare MLOC_53577 N 0.000
MTR_5g009410 Medicago truncatula MTR_5g009410 I 0.000
OGLUM05G28130 Oryza glumaepatula OGLUM05G28130 N 0.000
ONIVA05G28560 Oryza nivara ONIVA05G28560 N 0.000
OPUNC05G24070 Oryza punctata OPUNC05G24070 N 0.000
orange1.1g045091m.g Citrus sinensis orange1.1g045091m.g I 0.000
ORGLA03G0412600 Oryza glaberrima ORGLA03G0412600 N 0.000
ORGLA05G0229700 Oryza glaberrima ORGLA05G0229700 N 0.000
ORUFI05G28440 Oryza rufipogon ORUFI05G28440 N 0.000
OS05G0572000 Oryza sativa OS05G0572000 N 0.000
Pavir.J01332 Panicum virgatum Pavir.J01332 N 0.000
Pavir.J10163 Panicum virgatum Pavir.J10163 N 0.000
PGSC0003DMG400012154 Solanum tuberosum PGSC0003DMG400012154 I 0.000
PK09586.1 Cannabis sativa PK09586.1 I 0.000
Pm024053 Prunus mume Pm024053 I 0.000
POPTR_0001s10540 Populus trichocarpa POPTR_0001s10540 I 0.000
POPTR_0003s13910 Populus trichocarpa POPTR_0003s13910 I 0.000
PRUPE_ppa009005mg Prunus persica PRUPE_ppa009005mg I 0.000
SapurV1A.0035s0570 Salix purpurea SapurV1A.0035s0570 I 0.000
SapurV1A.0237s0310 Salix purpurea SapurV1A.0237s0310 I 0.000
Sb09g029070 Sorghum bicolor Sb09g029070 N 0.000
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.000
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I 0.000
Solyc08g082210.2 Solanum lycopersicum Solyc08g082210.2 I 0.000
TCM_016452 Theobroma cacao TCM_016452 I 0.000
Thhalv10023588m.g Eutrema salsugineum Thhalv10023588m.g I 0.000
VIT_02s0025g01360 Vitis vinifera VIT_02s0025g01360 I 0.000
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.000