Bra001802 (Brassica rapa)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04873 (EIN3) IPR006957 Bra001802 T175019_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
EIN3
M00725_2.00
Arabidopsis thaliana
NNRTDHAYNN

NNRTDHAYNN
PBM
Chang et al.(2013)
pTH8729
0.880 0.880
EIN3
M06878_2.00
Arabidopsis thaliana
GDMYANRTWCAWTGH

DCAWTGWAYNTRKHC
Dap-seq
OMalley et al.(2016)
EIN3_col_a
0.880 0.880
EIN3
M06879_2.00
Arabidopsis thaliana
RCCGTTR

YAACGGY
Dap-seq
OMalley et al.(2016)
EIN3_colamp_a
0.880 0.880
Q9ZWK1_TOBAC
M10470_2.00
Nicotiana tabacum
AGRTWCAT

ATGWAYCT
Transfac
Matys et al.(2006)
P$TEIL_01
0.855 0.855
EIL1
M00724_2.00
Arabidopsis thaliana
NNVRTDMRN

NYKHAYBNN
PBM
Chang et al.(2013)
pTH7932
0.839 0.839
e_gw1.87.73.1
M00726_2.00
Physcomitrella patens
NNNRTDCDBN

NVHGHAYNNN
PBM
Chang et al.(2013)
pTH8479
0.803 0.803
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001802.1-P EIN3 43 293

Links

Other EIN3 family TFs
Other Brassica rapa TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo3g076180 Brassica oleracea Bo3g076180 I 0.956
Bo5g106280 Brassica oleracea Bo5g106280 I 0.895
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.890
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.890
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.890
Bo1g108650 Brassica oleracea Bo1g108650 I 0.888
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.884
EIN3 Arabidopsis thaliana AT3G20770 D 0.880
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.871
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.871
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.870
29708.m000185 Ricinus communis 29708.m000185 I 0.863
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.862
TCM_042022 Theobroma cacao TCM_042022 I 0.862
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.862
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.859
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.859
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.855
mgf018950m Mimulus guttatus mgf018950m I 0.855
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.855
Bra000528 Brassica rapa Bra000528 I 0.855
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.855
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.855
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.854
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.851
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.851
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.851
Bo3g041690 Brassica oleracea Bo3g041690 I 0.847
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.847
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.847
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.847
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.847
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.847
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.847
Ca_07534 Cicer arietinum Ca_07534 I 0.846
EIL1 Arabidopsis thaliana AT2G27050 D 0.846
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.843
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.843
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.839
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.839
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.839
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.839
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.839
Ca_10236 Cicer arietinum Ca_10236 I 0.839
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.839
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.837
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.835
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.835
mgf015996m Mimulus guttatus mgf015996m I 0.835
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.835
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.835
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.831
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.825
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.825
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.825
Pm017009 Prunus mume Pm017009 I 0.823
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.823
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.823
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.823
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.821
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.821
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.819
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.819
MDP0000202831 Malus domestica MDP0000202831 I 0.819
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.815
MDP0000564884 Malus domestica MDP0000564884 I 0.815
PK01239.1 Cannabis sativa PK01239.1 I 0.815
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.815
PK13351.1 Cannabis sativa PK13351.1 I 0.815
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.815
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.815
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.815
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.815
MDP0000212881 Malus domestica MDP0000212881 I 0.815
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.811
MDP0000306498 Malus domestica MDP0000306498 I 0.811
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.811
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.811
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.803
mgf012394m Mimulus guttatus mgf012394m I 0.803
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.799
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.779
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.779
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.779
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.779
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.779
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.779
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.779
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.779
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.775
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.775
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.775
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.775
OS03G0324200 Oryza sativa OS03G0324200 I 0.773
OS03G0324300 Oryza sativa OS03G0324300 I 0.773
Si034616m.g Setaria italica Si034616m.g I 0.771
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.771
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.771
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.771
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.771
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.771
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.769
evm.TU.supercontig_54.30 Carica papaya evm.TU.supercontig_54.30 I 0.767
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.765
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.765
F775_28545 Aegilops tauschii F775_28545 I 0.765
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.763
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.763
PRUPE_ppa003493mg Prunus persica PRUPE_ppa003493mg I 0.763
OMERI07G23380 Oryza meridionalis OMERI07G23380 I 0.763
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.763
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.759
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.759
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.759
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.759
OS07G0685700 Oryza sativa OS07G0685700 I 0.759
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.759
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.755
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.731
GRMZM2G151811 Zea mays GRMZM2G151811 I 0.731
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.731
Si029213m.g Setaria italica Si029213m.g I 0.729
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.715
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I 0.715
Pavir.J01001 Panicum virgatum Pavir.J01001 I 0.715
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.711
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.711
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I 0.707
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I 0.703
OBART07G26760 Oryza barthii OBART07G26760 I 0.703
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.700