gene20650-v1.0-hybrid (Fragaria vesca)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04873 (EIN3) IPR006957 gene20650-v1.0-hybrid T175352_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
EIL3
M00723_2.00
Arabidopsis thaliana
NAGRTWCATNN

NNATGWAYCTN
PBM
Chang et al.(2013)
pTH7933
0.830 0.830
EIL3
M06877_2.00
Arabidopsis thaliana
NYGTCYAGRTWCAWDNWHNHH

DDNDWNHWTGWAYCTRGACRN
Dap-seq
OMalley et al.(2016)
EIL3_col_b
0.830 0.830
OS09G0490200
M01970_2.00
Oryza sativa
NMGRTACATNN

NNATGTAYCKN
PBM
Weirauch et al.(2014)
pTH9013
0.806 0.806
e_gw1.87.73.1
M00726_2.00
Physcomitrella patens
NNNRTDCDBN

NVHGHAYNNN
PBM
Chang et al.(2013)
pTH8479
0.737 0.737
Q9ZWK1_TOBAC
M10470_2.00
Nicotiana tabacum
AGRTWCAT

ATGWAYCT
Transfac
Matys et al.(2006)
P$TEIL_01
0.713 0.713
EIN3
M00725_2.00
Arabidopsis thaliana
NNRTDHAYNN

NNRTDHAYNN
PBM
Chang et al.(2013)
pTH8729
0.704 0.704
EIN3
M06878_2.00
Arabidopsis thaliana
GDMYANRTWCAWTGH

DCAWTGWAYNTRKHC
Dap-seq
OMalley et al.(2016)
EIN3_col_a
0.704 0.704
EIN3
M06879_2.00
Arabidopsis thaliana
RCCGTTR

YAACGGY
Dap-seq
OMalley et al.(2016)
EIN3_colamp_a
0.704 0.704
EIL1
M00724_2.00
Arabidopsis thaliana
NNVRTDMRN

NYKHAYBNN
PBM
Chang et al.(2013)
pTH7932
0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20650.1-v1.0-hybrid EIN3 37 284

Links

Other EIN3 family TFs
Other Fragaria vesca TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29708.m000185 Ricinus communis 29708.m000185 I 0.704
30169.m006395 Ricinus communis 30169.m006395 I 0.911
AC234203.1_FG011 Zea mays AC234203.1_FG011 I 0.723
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.794
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.737
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I 0.858
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.709
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.729
BGIOSGA029545 Oryza indica BGIOSGA029545 I 0.806
Bo3g041690 Brassica oleracea Bo3g041690 I 0.700
Bo6g087550 Brassica oleracea Bo6g087550 I 0.810
Bo6g118030 Brassica oleracea Bo6g118030 I 0.833
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.707
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I 0.818
Bra000528 Brassica rapa Bra000528 I 0.704
Bra003831 Brassica rapa Bra003831 I 0.731
Bra008110 Brassica rapa Bra008110 I 0.806
Bra015970 Brassica rapa Bra015970 I 0.826
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.717
BRADI3G39970 Brachypodium distachyon BRADI3G39970 I 0.713
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I 0.769
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I 0.830
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.707
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.704
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.707
Carubv10020043m.g Capsella rubella Carubv10020043m.g I 0.830
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.704
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.903
cassava30700.valid.m1 Manihot esculenta cassava30700.valid.m1 I 0.850
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.717
Ca_02669 Cicer arietinum Ca_02669 I 0.915
Ca_07534 Cicer arietinum Ca_07534 I 0.707
Ca_10236 Cicer arietinum Ca_10236 I 0.704
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.713
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.919
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.707
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.711
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.704
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.923
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.709
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.919
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.709
EIL1 Arabidopsis thaliana AT2G27050 D 0.700
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.709
EIL3 Arabidopsis lyrata scaffold_202309.1 I 0.834
EIL3 Arabidopsis thaliana AT1G73730 D 0.830
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.891
EIN3 Arabidopsis thaliana AT3G20770 D 0.704
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.711
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.899
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.704
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.724
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.713
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.737
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.737
F775_17920 Aegilops tauschii F775_17920 I 0.781
F775_28545 Aegilops tauschii F775_28545 I 0.713
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.704
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.709
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.709
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.704
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.915
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.709
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.931
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.713
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.709
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.709
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I 0.862
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.713
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I 0.866
Gorai.013G250300 Gossypium raimondii Gorai.013G250300 I 0.789
GRMZM2G006752 Zea mays GRMZM2G006752 I 0.757
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.717
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.725
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.713
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.713
GSMUA_Achr3G11160_001 Musa acuminata GSMUA_Achr3G11160_001 I 0.781
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.721
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.709
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I 0.765
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I 0.785
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.725
LPERR08G16890 Leersia perrieri LPERR08G16890 I 0.753
LPERR09G10870 Leersia perrieri LPERR09G10870 I 0.771
Lus10031245.g Linum usitatissimum Lus10031245.g I 0.887
Lus10031817.g Linum usitatissimum Lus10031817.g I 0.870
MDP0000202831 Malus domestica MDP0000202831 I 0.713
MDP0000212881 Malus domestica MDP0000212881 I 0.704
MDP0000306498 Malus domestica MDP0000306498 I 0.704
MDP0000490180 Malus domestica MDP0000490180 I 0.939
MDP0000562585 Malus domestica MDP0000562585 I 0.935
MDP0000564884 Malus domestica MDP0000564884 I 0.704
MDP0000565880 Malus domestica MDP0000565880 I 0.935
mgf020935m Mimulus guttatus mgf020935m I 0.854
MLOC_10315 Hordeum vulgare MLOC_10315 I 0.735
MLOC_10823 Hordeum vulgare MLOC_10823 I 0.777
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.713
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.915
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.709
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.709
OB08G26880 Oryza brachyantha OB08G26880 I 0.737
OB09G21280 Oryza brachyantha OB09G21280 I 0.775
OBART08G19960 Oryza barthii OBART08G19960 I 0.737
OBART09G14750 Oryza barthii OBART09G14750 I 0.810
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.729
OGLUM08G21190 Oryza glumaepatula OGLUM08G21190 I 0.741
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I 0.810
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.729
OMERI05G02190 Oryza meridionalis OMERI05G02190 I 0.758
OMERI08G16770 Oryza meridionalis OMERI08G16770 I 0.737
OMERI09G11470 Oryza meridionalis OMERI09G11470 I 0.806
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.729
ONIVA08G17420 Oryza nivara ONIVA08G17420 I 0.810
ONIVA08G22530 Oryza nivara ONIVA08G22530 I 0.737
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.729
OPUNC08G18080 Oryza punctata OPUNC08G18080 I 0.731
OPUNC09G13210 Oryza punctata OPUNC09G13210 I 0.802
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.704
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.711
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.923
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.707
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.729
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I 0.810
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.729
ORUFI08G22370 Oryza rufipogon ORUFI08G22370 I 0.737
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I 0.806
OS03G0324200 Oryza sativa OS03G0324200 I 0.717
OS03G0324300 Oryza sativa OS03G0324300 I 0.717
OS08G0508700 Oryza sativa OS08G0508700 I 0.737
OS09G0490200 Oryza sativa OS09G0490200 D 0.806
Pavir.Fa00424 Panicum virgatum Pavir.Fa00424 I 0.719
Pavir.Fb01951 Panicum virgatum Pavir.Fb01951 I 0.729
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.717
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.733
Pavir.J02229 Panicum virgatum Pavir.J02229 I 0.765
Pavir.J14329 Panicum virgatum Pavir.J14329 I 0.773
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I 0.778
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.713
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.700
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I 0.818
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.704
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.858
PK01239.1 Cannabis sativa PK01239.1 I 0.709
PK13351.1 Cannabis sativa PK13351.1 I 0.721
PK19114.1 Cannabis sativa PK19114.1 I 0.919
Pm017009 Prunus mume Pm017009 I 0.700
Pm028171 Prunus mume Pm028171 I 0.919
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.911
POPTR_0001s05370 Populus trichocarpa POPTR_0001s05370 I 0.767
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.903
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.700
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.703
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.700
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.923
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.704
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.713
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.899
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.703
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.700
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.709
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.919
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.729
Sb02g028390 Sorghum bicolor Sb02g028390 I 0.751
Sb07g027790 Sorghum bicolor Sb07g027790 I 0.719
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.739
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.739
Si013426m.g Setaria italica Si013426m.g I 0.741
Si029259m.g Setaria italica Si029259m.g I 0.777
Si034616m.g Setaria italica Si034616m.g I 0.733
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I 0.822
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.703
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.854
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.707
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.713
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.700
TCM_040510 Theobroma cacao TCM_040510 I 0.895
TCM_042022 Theobroma cacao TCM_042022 I 0.720
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.704
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I 0.837
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.703
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.713
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.729
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I 0.777
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I 0.781
Traes_7AS_34D476D5D1 Triticum aestivum Traes_7AS_34D476D5D1 I 0.733
Traes_7BS_733347AC0 Triticum aestivum Traes_7BS_733347AC0 I 0.735
Traes_7DS_3673F1C73 Triticum aestivum Traes_7DS_3673F1C73 I 0.735
TRIUR3_28079 Triticum urartu TRIUR3_28079 I 0.733
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.720