Gorai.009G105400 (Gossypium raimondii)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04873 (EIN3) IPR006957 Gorai.009G105400 T175361_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9ZWK1_TOBAC
M10470_2.00
Nicotiana tabacum
AGRTWCAT

ATGWAYCT
Transfac
Matys et al.(2006)
P$TEIL_01
0.935 0.935
EIN3
M00725_2.00
Arabidopsis thaliana
NNRTDHAYNN

NNRTDHAYNN
PBM
Chang et al.(2013)
pTH8729
0.927 0.927
EIN3
M06878_2.00
Arabidopsis thaliana
GDMYANRTWCAWTGH

DCAWTGWAYNTRKHC
Dap-seq
OMalley et al.(2016)
EIN3_col_a
0.927 0.927
EIN3
M06879_2.00
Arabidopsis thaliana
RCCGTTR

YAACGGY
Dap-seq
OMalley et al.(2016)
EIN3_colamp_a
0.927 0.927
EIL1
M00724_2.00
Arabidopsis thaliana
NNVRTDMRN

NYKHAYBNN
PBM
Chang et al.(2013)
pTH7932
0.902 0.902
e_gw1.87.73.1
M00726_2.00
Physcomitrella patens
NNNRTDCDBN

NVHGHAYNNN
PBM
Chang et al.(2013)
pTH8479
0.854 0.854
EIL3
M00723_2.00
Arabidopsis thaliana
NAGRTWCATNN

NNATGWAYCTN
PBM
Chang et al.(2013)
pTH7933
0.711 0.711
EIL3
M06877_2.00
Arabidopsis thaliana
NYGTCYAGRTWCAWDNWHNHH

DDNDWNHWTGWAYCTRGACRN
Dap-seq
OMalley et al.(2016)
EIL3_col_b
0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G105400.1 EIN3 47 294

Links

Other EIN3 family TFs
Other Gossypium raimondii TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.854
EIL3 Arabidopsis thaliana AT1G73730 D 0.711
EIL1 Arabidopsis thaliana AT2G27050 D 0.899
EIN3 Arabidopsis thaliana AT3G20770 D 0.927
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.931
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.717
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.886
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.923
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.906
mgf020935m Mimulus guttatus mgf020935m I 0.700
mgf018950m Mimulus guttatus mgf018950m I 0.873
mgf015996m Mimulus guttatus mgf015996m I 0.880
mgf012394m Mimulus guttatus mgf012394m I 0.813
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I 0.711
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I 0.711
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.717
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.947
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.902
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.886
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.891
Carubv10020043m.g Capsella rubella Carubv10020043m.g I 0.711
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.923
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.891
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.923
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.846
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.886
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.711
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.894
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.711
TRIUR3_30860 Triticum urartu TRIUR3_30860 I 0.711
Traes_5DL_62DEF8361 Triticum aestivum Traes_5DL_62DEF8361 I 0.735
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.813
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I 0.852
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.801
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I 0.721
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.915
Ca_02669 Cicer arietinum Ca_02669 I 0.709
Ca_07534 Cicer arietinum Ca_07534 I 0.931
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.951
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.972
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.709
30169.m006395 Ricinus communis 30169.m006395 I 0.720
29708.m000185 Ricinus communis 29708.m000185 I 0.963
Pm028171 Prunus mume Pm028171 I 0.711
Pm017009 Prunus mume Pm017009 I 0.911
Ca_10236 Cicer arietinum Ca_10236 I 0.959
TCM_042022 Theobroma cacao TCM_042022 I 0.980
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.878
PDK_20s1443543g001 Phoenix dactylifera PDK_20s1443543g001 I 0.786
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.939
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.882
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.882
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.704
Pavir.J01001 Panicum virgatum Pavir.J01001 I 0.748
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.809
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.801
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I 0.740
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.886
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.959
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.709
LjSGA_055593.1 Lotus japonicus LjSGA_055593.1 I 0.711
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.717
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.951
PK19114.1 Cannabis sativa PK19114.1 I 0.717
PK13351.1 Cannabis sativa PK13351.1 I 0.894
PK01239.1 Cannabis sativa PK01239.1 I 0.894
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.927
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I 0.711
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.911
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.717
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.902
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I 0.713
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.959
Gorai.004G035300 Gossypium raimondii Gorai.004G035300 I 0.830
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.947
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.923
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.713
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.874
evm.TU.supercontig_54.30 Carica papaya evm.TU.supercontig_54.30 I 0.821
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.943
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.947
Lus10031245.g Linum usitatissimum Lus10031245.g I 0.700
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.947
MDP0000565880 Malus domestica MDP0000565880 I 0.715
MDP0000564884 Malus domestica MDP0000564884 I 0.894
MDP0000562585 Malus domestica MDP0000562585 I 0.715
MDP0000490180 Malus domestica MDP0000490180 I 0.715
MDP0000306498 Malus domestica MDP0000306498 I 0.894
MDP0000212881 Malus domestica MDP0000212881 I 0.894
MDP0000202831 Malus domestica MDP0000202831 I 0.911
Lus10031817.g Linum usitatissimum Lus10031817.g I 0.707
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.963
TCM_040510 Theobroma cacao TCM_040510 I 0.707
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.809
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I 0.751
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.819
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.761
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.837
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.793
GRMZM2G151811 Zea mays GRMZM2G151811 I 0.753
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.797
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.740
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.955
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.837
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.835
OBART07G26760 Oryza barthii OBART07G26760 I 0.774
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.947
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.923
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.728
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.801
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.740
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.829
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.797
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.819
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.729
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.951
Bo6g118030 Brassica oleracea Bo6g118030 I 0.707
Bo6g087550 Brassica oleracea Bo6g087550 I 0.709
Bo5g106280 Brassica oleracea Bo5g106280 I 0.907
Bo3g076180 Brassica oleracea Bo3g076180 I 0.854
Bo3g041690 Brassica oleracea Bo3g041690 I 0.879
Bo1g108650 Brassica oleracea Bo1g108650 I 0.869
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.785
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.809
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.871
Bra000528 Brassica rapa Bra000528 I 0.887
Bra001802 Brassica rapa Bra001802 I 0.847
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.737
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.955
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.943
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.939
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.906
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.923
F775_28545 Aegilops tauschii F775_28545 I 0.801
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.813
Bra015970 Brassica rapa Bra015970 I 0.702
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.727
OLONG_004360 Oryza longistaminata OLONG_004360 I 0.733
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.894
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.801
EIL3 Arabidopsis lyrata scaffold_202309.1 I 0.707
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.724
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.801
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.886
PRUPE_ppa003493mg Prunus persica PRUPE_ppa003493mg I 0.861
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.715
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.882
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.947
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.801
SELMODRAFT_16064 Selaginella moellendorffii SELMODRAFT_16064 I 0.724
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.911
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.862
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.711
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.927
Si034616m.g Setaria italica Si034616m.g I 0.793
Si029213m.g Setaria italica Si029213m.g I 0.745
SELMODRAFT_449238 Selaginella moellendorffii SELMODRAFT_449238 I 0.801
SELMODRAFT_419770 Selaginella moellendorffii SELMODRAFT_419770 I 0.841
SELMODRAFT_16065 Selaginella moellendorffii SELMODRAFT_16065 I 0.724
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.886
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.955
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.809
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.785
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.809
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.769
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.809
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.785
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.809
OMERI07G23380 Oryza meridionalis OMERI07G23380 I 0.769
OMERI05G02190 Oryza meridionalis OMERI05G02190 I 0.727
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.785
OS03G0324200 Oryza sativa OS03G0324200 I 0.809
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.707
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.721
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.713
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.866
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.927
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.906
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.886
OS07G0685700 Oryza sativa OS07G0685700 I 0.785
OS03G0324300 Oryza sativa OS03G0324300 I 0.809
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.809