orange1.1g007174m.g (Citrus sinensis)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04873 (EIN3) IPR006957 orange1.1g007174m.g T175386_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9ZWK1_TOBAC
M10470_2.00
Nicotiana tabacum
AGRTWCAT

ATGWAYCT
Transfac
Matys et al.(2006)
P$TEIL_01
0.898 0.898
EIN3
M00725_2.00
Arabidopsis thaliana
NNRTDHAYNN

NNRTDHAYNN
PBM
Chang et al.(2013)
pTH8729
0.882 0.882
EIN3
M06878_2.00
Arabidopsis thaliana
GDMYANRTWCAWTGH

DCAWTGWAYNTRKHC
Dap-seq
OMalley et al.(2016)
EIN3_col_a
0.882 0.882
EIN3
M06879_2.00
Arabidopsis thaliana
RCCGTTR

YAACGGY
Dap-seq
OMalley et al.(2016)
EIN3_colamp_a
0.882 0.882
EIL1
M00724_2.00
Arabidopsis thaliana
NNVRTDMRN

NYKHAYBNN
PBM
Chang et al.(2013)
pTH7932
0.870 0.870
e_gw1.87.73.1
M00726_2.00
Physcomitrella patens
NNNRTDCDBN

NVHGHAYNNN
PBM
Chang et al.(2013)
pTH8479
0.841 0.841
EIL3
M00723_2.00
Arabidopsis thaliana
NAGRTWCATNN

NNATGWAYCTN
PBM
Chang et al.(2013)
pTH7933
0.703 0.703
EIL3
M06877_2.00
Arabidopsis thaliana
NYGTCYAGRTWCAWDNWHNHH

DDNDWNHWTGWAYCTRGACRN
Dap-seq
OMalley et al.(2016)
EIL3_col_b
0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g007173m EIN3 47 294
orange1.1g007174m EIN3 47 294
orange1.1g007180m EIN3 47 294
orange1.1g007186m EIN3 47 294
orange1.1g007187m EIN3 47 294
orange1.1g012304m EIN3 47 294

Links

Other EIN3 family TFs
Other Citrus sinensis TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 1.000
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.939
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.939
MDP0000212881 Malus domestica MDP0000212881 I 0.931
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.931
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.931
MDP0000564884 Malus domestica MDP0000564884 I 0.931
MDP0000202831 Malus domestica MDP0000202831 I 0.927
Pm017009 Prunus mume Pm017009 I 0.927
MDP0000306498 Malus domestica MDP0000306498 I 0.923
PK01239.1 Cannabis sativa PK01239.1 I 0.923
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.919
PK13351.1 Cannabis sativa PK13351.1 I 0.919
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.919
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.919
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.915
29708.m000185 Ricinus communis 29708.m000185 I 0.915
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.915
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.911
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.911
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.911
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.906
TCM_042022 Theobroma cacao TCM_042022 I 0.906
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.906
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.902
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.902
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.902
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.902
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.902
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.902
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.898
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.898
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.898
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.898
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.898
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.898
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.898
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.898
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.894
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.894
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.894
Ca_10236 Cicer arietinum Ca_10236 I 0.894
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.894
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.894
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.890
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.890
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.890
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.886
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.886
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.886
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.886
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.886
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.882
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.882
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.882
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.882
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.882
EIN3 Arabidopsis thaliana AT3G20770 D 0.882
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.882
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.878
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.878
Ca_07534 Cicer arietinum Ca_07534 I 0.878
Bo5g106280 Brassica oleracea Bo5g106280 I 0.878
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.878
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.878
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.874
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.870
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.870
EIL1 Arabidopsis thaliana AT2G27050 D 0.870
Bra000528 Brassica rapa Bra000528 I 0.862
mgf015996m Mimulus guttatus mgf015996m I 0.862
mgf018950m Mimulus guttatus mgf018950m I 0.862
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.858
Bo3g041690 Brassica oleracea Bo3g041690 I 0.858
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.858
Bo1g108650 Brassica oleracea Bo1g108650 I 0.850
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.850
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.846
mgf012394m Mimulus guttatus mgf012394m I 0.846
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.846
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.841
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.841
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.841
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.841
PRUPE_ppa003493mg Prunus persica PRUPE_ppa003493mg I 0.837
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.837
F775_28545 Aegilops tauschii F775_28545 I 0.837
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.837
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.837
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.837
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.837
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.837
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.837
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.837
OS03G0324200 Oryza sativa OS03G0324200 I 0.837
OS03G0324300 Oryza sativa OS03G0324300 I 0.837
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.837
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.837
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.837
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.833
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.833
Si034616m.g Setaria italica Si034616m.g I 0.829
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.829
Bra001802 Brassica rapa Bra001802 I 0.825
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.825
evm.TU.supercontig_54.30 Carica papaya evm.TU.supercontig_54.30 I 0.821
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.817
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.817
Bo3g076180 Brassica oleracea Bo3g076180 I 0.813
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.809
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.805
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.805
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.805
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.797
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.797
OMERI07G23380 Oryza meridionalis OMERI07G23380 I 0.797
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.797
OS07G0685700 Oryza sativa OS07G0685700 I 0.797
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.797
Si029213m.g Setaria italica Si029213m.g I 0.768
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.768
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I 0.768
GRMZM2G151811 Zea mays GRMZM2G151811 I 0.752
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I 0.752
Pavir.J01001 Panicum virgatum Pavir.J01001 I 0.748
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.744
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.740
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.740
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I 0.736
OBART07G26760 Oryza barthii OBART07G26760 I 0.736
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.732
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.732
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.732
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.728
30169.m006395 Ricinus communis 30169.m006395 I 0.724
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.724
PK19114.1 Cannabis sativa PK19114.1 I 0.724
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.721
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.720
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.720
Pm028171 Prunus mume Pm028171 I 0.720
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.720
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.715
SELMODRAFT_16064 Selaginella moellendorffii SELMODRAFT_16064 I 0.715
SELMODRAFT_16065 Selaginella moellendorffii SELMODRAFT_16065 I 0.715
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.715
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.715
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.715
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.715
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I 0.711
MDP0000562585 Malus domestica MDP0000562585 I 0.711
MDP0000490180 Malus domestica MDP0000490180 I 0.711
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.711
MDP0000565880 Malus domestica MDP0000565880 I 0.711
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.711
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I 0.709
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.707
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.707
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I 0.707
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I 0.707
TCM_040510 Theobroma cacao TCM_040510 I 0.707
Bo6g087550 Brassica oleracea Bo6g087550 I 0.707
Carubv10020043m.g Capsella rubella Carubv10020043m.g I 0.707
Ca_02669 Cicer arietinum Ca_02669 I 0.707
Lus10031817.g Linum usitatissimum Lus10031817.g I 0.707
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I 0.703
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.703
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I 0.703
EIL3 Arabidopsis thaliana AT1G73730 D 0.703