gabpa.S (Xenopus laevis)
Ets

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00178 (Ets) IPR000418 XB-GENE-17331756 T178063_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gabpa
M00157_2.00
Mus musculus
NRCCGGAARY

RYTTCCGGYN
PBM
Badis et al.(2009)
Gabpa_2829
0.631 1.000
Gabpa
M01482_2.00
Mus musculus
RSCGGAARY

RYTTCCGSY
PBM
Wei et al.(2010)
Gabpa
0.631 1.000
GABPA
M02996_2.00
Homo sapiens
RCCGGAAGTD

HACTTCCGGY
SELEX
Jolma et al.(2013)
GABPA_1
0.631 1.000
GABPA
M04768_2.00
Homo sapiens
NRCCGGAARYN

NRYTTCCGGYN
SELEX
Yin et al.(2017)
GABPA_eDBD_HT-SELEX
0.631 1.000
GABPA
M05865_2.00
Homo sapiens
RSCGGAWRYNN

NNRYWTCCGSY
SMiLE-seq
Isakova et al.(2017)
GABPA
0.631 1.000
Gabpa
M08113_2.00
Mus musculus
CCGGAAGYVVN

NBBRCTTCCGG
ChIP-seq
Mathelier et al.(2014)
MA0062.2
0.631 1.000
GABPA
M07952_2.00
Homo sapiens
VVCCGGAAGYV

BRCTTCCGGBB
ChIP-seq
Gerstein et al.(2012)
GM12878_GABP_HudsonAlpha
0.631 1.000
GABPA
M07953_2.00
Homo sapiens
NVCCGGAAGYV

BRCTTCCGGBN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_GABP_HudsonAlpha
0.631 1.000
GABPA
M07954_2.00
Homo sapiens
VVVCCGGAAGYNVN

NBNRCTTCCGGBBB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_GABP_HudsonAlpha
0.631 1.000
GABPA
M07955_2.00
Homo sapiens
NBVVVSCGGAAGYVV

BBRCTTCCGSBBBVN
ChIP-seq
Gerstein et al.(2012)
HepG2_GABP_HudsonAlpha
0.631 1.000
GABPA
M07956_2.00
Homo sapiens
VVVVCCGGAAGTN

NACTTCCGGBBBB
ChIP-seq
Gerstein et al.(2012)
K562_GABP_HudsonAlpha
0.631 1.000
GABPA
M09056_2.00
Homo sapiens
VVNRSCGGAAGYVV

BBRCTTCCGSYNBB
Misc
Kulakovskiy et al.(2013)
GABPA_HUMAN.H11MO.0.A
0.631 1.000
Gabpa
M09069_2.00
Mus musculus
NVVVSCGGAAGYRV

BYRCTTCCGSBBBN
Misc
Kulakovskiy et al.(2013)
GABPA_MOUSE.H11MO.0.A
0.631 1.000
GABPA
M09535_2.00
Homo sapiens
NRCMGGAAGY

RCTTCCKGYN
Misc
Heinz et al.(2010)
Jurkat-GABPa_GSE17954
0.631 1.000
GABPA
M10504_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GABPA_07
0.631 1.000
GABPA
M10505_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GABPA_08
0.631 1.000
GABPA
M10506_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GABPA_Q4
0.631 1.000
GABPA
M10507_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GABP_B
0.631 1.000
GABPA
M10508_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GADP_01
0.631 1.000
GABPA
M04769_2.00
Homo sapiens
NRCCGGAARYN

NRYTTCCGGYN
SELEX
Yin et al.(2017)
GABPA_eDBD_Methyl-HT-SELEX
0.631 1.000
For this family, TFs with SR scores > 0.717 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CAA62623 Ets 119 146

Links

Other Ets family TFs
Other Xenopus laevis TFs

Invalid Input OrderBy

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action