CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gabpa.S
(
Xenopus laevis
)
Ets
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00178 (Ets)
IPR000418
XB-GENE-17331756
T178063_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gabpa
M00157_2.00
Mus musculus
NRCCGGAARY
RYTTCCGGYN
PBM
Badis et al.(2009)
Gabpa_2829
0.631
1.000
Gabpa
M01482_2.00
Mus musculus
RSCGGAARY
RYTTCCGSY
PBM
Wei et al.(2010)
Gabpa
0.631
1.000
GABPA
M02996_2.00
Homo sapiens
RCCGGAAGTD
HACTTCCGGY
SELEX
Jolma et al.(2013)
GABPA_1
0.631
1.000
GABPA
M04768_2.00
Homo sapiens
NRCCGGAARYN
NRYTTCCGGYN
SELEX
Yin et al.(2017)
GABPA_eDBD_HT-SELEX
0.631
1.000
GABPA
M05865_2.00
Homo sapiens
RSCGGAWRYNN
NNRYWTCCGSY
SMiLE-seq
Isakova et al.(2017)
GABPA
0.631
1.000
Gabpa
M08113_2.00
Mus musculus
CCGGAAGYVVN
NBBRCTTCCGG
ChIP-seq
Mathelier et al.(2014)
MA0062.2
0.631
1.000
GABPA
M07952_2.00
Homo sapiens
VVCCGGAAGYV
BRCTTCCGGBB
ChIP-seq
Gerstein et al.(2012)
GM12878_GABP_HudsonAlpha
0.631
1.000
GABPA
M07953_2.00
Homo sapiens
NVCCGGAAGYV
BRCTTCCGGBN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_GABP_HudsonAlpha
0.631
1.000
GABPA
M07954_2.00
Homo sapiens
VVVCCGGAAGYNVN
NBNRCTTCCGGBBB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_GABP_HudsonAlpha
0.631
1.000
GABPA
M07955_2.00
Homo sapiens
NBVVVSCGGAAGYVV
BBRCTTCCGSBBBVN
ChIP-seq
Gerstein et al.(2012)
HepG2_GABP_HudsonAlpha
0.631
1.000
GABPA
M07956_2.00
Homo sapiens
VVVVCCGGAAGTN
NACTTCCGGBBBB
ChIP-seq
Gerstein et al.(2012)
K562_GABP_HudsonAlpha
0.631
1.000
GABPA
M09056_2.00
Homo sapiens
VVNRSCGGAAGYVV
BBRCTTCCGSYNBB
Misc
Kulakovskiy et al.(2013)
GABPA_HUMAN.H11MO.0.A
0.631
1.000
Gabpa
M09069_2.00
Mus musculus
NVVVSCGGAAGYRV
BYRCTTCCGSBBBN
Misc
Kulakovskiy et al.(2013)
GABPA_MOUSE.H11MO.0.A
0.631
1.000
GABPA
M09535_2.00
Homo sapiens
NRCMGGAAGY
RCTTCCKGYN
Misc
Heinz et al.(2010)
Jurkat-GABPa_GSE17954
0.631
1.000
GABPA
M10504_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GABPA_07
0.631
1.000
GABPA
M10505_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GABPA_08
0.631
1.000
GABPA
M10506_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GABPA_Q4
0.631
1.000
GABPA
M10507_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GABP_B
0.631
1.000
GABPA
M10508_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GADP_01
0.631
1.000
GABPA
M04769_2.00
Homo sapiens
NRCCGGAARYN
NRYTTCCGGYN
SELEX
Yin et al.(2017)
GABPA_eDBD_Methyl-HT-SELEX
0.631
1.000
For this family, TFs with SR scores >
0.717
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CAA62623
Ets
119
146
QLWQFLLELLTDKDARDCISWVGDEGEF
Links
Other
Ets
family TFs
Other
Xenopus laevis
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy