AT3G59470 (Arabidopsis thaliana)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 AT3G59470 T178987_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G59470.1 FAR1 84 172
AT3G59470.2 FAR1 96 184
AT3G59470.3 FAR1 84 172

Links

Other FAR1 family TFs
Other Arabidopsis thaliana TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_503155.1 Arabidopsis lyrata scaffold_503155.1 N 1.000
Cagra.5954s0021 Capsella grandiflora Cagra.5954s0021 N 0.978
Bostr.20903s0171 Boechera stricta Bostr.20903s0171 N 0.978
Thhalv10006173m.g Eutrema salsugineum Thhalv10006173m.g N 0.978
Carubv10017836m.g Capsella rubella Carubv10017836m.g N 0.978
Bra003377 Brassica rapa Bra003377 N 0.966
Bo8g093280 Brassica oleracea Bo8g093280 N 0.966
Bo6g076470 Brassica oleracea Bo6g076470 N 0.955
Ciclev10021841m.g Citrus clementina Ciclev10021841m.g N 0.809
orange1.1g025532m.g Citrus sinensis orange1.1g025532m.g N 0.809
MDP0000618200 Malus domestica MDP0000618200 N 0.798
PRUPE_ppa011567mg Prunus persica PRUPE_ppa011567mg N 0.787
Cucsa.094440 Cucumis sativus Cucsa.094440 N 0.787
SapurV1A.4098s0020 Salix purpurea SapurV1A.4098s0020 N 0.787
Cla010925 Citrullus lanatus Cla010925 N 0.787
cassava30288.valid.m1 Manihot esculenta cassava30288.valid.m1 N 0.787
evm.TU.supercontig_195.42 Carica papaya evm.TU.supercontig_195.42 N 0.787
VIT_05s0102g00690 Vitis vinifera VIT_05s0102g00690 N 0.787
PGSC0003DMG402027016 Solanum tuberosum PGSC0003DMG402027016 N 0.775
MTR_4g067290 Medicago truncatula MTR_4g067290 N 0.775
gene21669-v1.0-hybrid Fragaria vesca gene21669-v1.0-hybrid N 0.775
POPTR_0017s05780 Populus trichocarpa POPTR_0017s05780 N 0.775
POPTR_0007s01870 Populus trichocarpa POPTR_0007s01870 N 0.775
Gorai.005G016700 Gossypium raimondii Gorai.005G016700 N 0.775
Gorai.005G126700 Gossypium raimondii Gorai.005G126700 N 0.775
PK13380.1 Cannabis sativa PK13380.1 N 0.764
27914.m000423 Ricinus communis 27914.m000423 N 0.764
mgf020729m Mimulus guttatus mgf020729m N 0.764
TCM_020020 Theobroma cacao TCM_020020 N 0.764
MTR_2g098920 Medicago truncatula MTR_2g098920 N 0.764
cassava38728.m1 Manihot esculenta cassava38728.m1 N 0.764
Ca_02686 Cicer arietinum Ca_02686 N 0.764
SapurV1A.1078s0040 Salix purpurea SapurV1A.1078s0040 N 0.753
SapurV1A.0834s0190 Salix purpurea SapurV1A.0834s0190 N 0.753
GLYMA15G03440 Glycine max GLYMA15G03440 N 0.742
GLYMA12G05600 Glycine max GLYMA12G05600 N 0.730
GLYMA11G13610 Glycine max GLYMA11G13610 N 0.719