Bra040696 (Brassica rapa)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 Bra040696 T179111_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.867 0.867
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.867 0.867
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040696.1-P FAR1 70 159

Links

Other FAR1 family TFs
Other Brassica rapa TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g054750 Brassica oleracea Bo6g054750 I 1.000
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.911
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.889
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.889
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.889
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.867
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.867
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.867
FAR1 Arabidopsis thaliana AT4G15090 D 0.867
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.856
PK04639.1 Cannabis sativa PK04639.1 I 0.856
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.856
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.844
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.844
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.844
TCM_002030 Theobroma cacao TCM_002030 I 0.844
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.833
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.833
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.833
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.833
Pm014858 Prunus mume Pm014858 I 0.833
mgf008053m Mimulus guttatus mgf008053m I 0.833
30106.m000672 Ricinus communis 30106.m000672 I 0.822
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.811