TCM_002030 (Theobroma cacao)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 TCM_002030 T180484_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.909 0.909
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.909 0.909
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.705 0.705
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX93191 FAR1 79 166

Links

Other FAR1 family TFs
Other Theobroma cacao TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
FHY3 Arabidopsis thaliana AT3G22170 D 0.705
FAR1 Arabidopsis thaliana AT4G15090 D 0.889
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.932
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.711
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.910
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.910
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.910
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.889
mgf014333m Mimulus guttatus mgf014333m I 0.711
mgf009829m Mimulus guttatus mgf009829m I 0.711
mgf008053m Mimulus guttatus mgf008053m I 0.875
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.909
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.733
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.722
PK08903.1 Cannabis sativa PK08903.1 I 0.750
PK04639.1 Cannabis sativa PK04639.1 I 0.943
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.920
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.923
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.955
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.722
MDP0000286803 Malus domestica MDP0000286803 I 0.761
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.989
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.744
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.932
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.733
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.750
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.750
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.744
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.733
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.733
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.943
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.909
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.920
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.744
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.744
Bra040696 Brassica rapa Bra040696 I 0.844
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.920
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.733
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.886
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.750
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.750
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.932
30106.m000672 Ricinus communis 30106.m000672 I 0.955
Pm014859 Prunus mume Pm014859 I 0.744
Pm014858 Prunus mume Pm014858 I 0.920
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.921
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.750
TCM_013043 Theobroma cacao TCM_013043 I 0.885
Bo6g054750 Brassica oleracea Bo6g054750 I 0.844