TCM_013043 (Theobroma cacao)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 TCM_013043 T180493_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.923 0.923
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.889 0.889
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.846 0.846
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.846 0.846
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY21467 FAR1 89 191
EOY21468 FAR1 89 191
EOY21469 FAR1 1 26
EOY21470 FAR1 1 26
EOY21471 FAR1 89 191
EOY21472 FAR1 1 26
EOY21473 FAR1 89 191
EOY21474 FAR1 89 191
EOY21475 FAR1 1 26
EOY21476 FAR1 11 113

Links

Other FAR1 family TFs
Other Theobroma cacao TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.967
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.967
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.962
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.962
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.962
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.962
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.956
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.956
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.956
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.956
Pm014859 Prunus mume Pm014859 I 0.956
MDP0000286803 Malus domestica MDP0000286803 I 0.956
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.956
PK08903.1 Cannabis sativa PK08903.1 I 0.956
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.944
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.933
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.933
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.923
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.923
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.923
FHY3 Arabidopsis thaliana AT3G22170 D 0.923
Thhalv10018262m.g Eutrema salsugineum Thhalv10018262m.g N 0.923
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.923
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.923
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.922
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.922
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.889
Bostr.20129s0070 Boechera stricta Bostr.20129s0070 N 0.885
Bo6g120360 Brassica oleracea Bo6g120360 N 0.885
FRS4 Arabidopsis thaliana AT1G76320 N 0.885
Cagra.0799s0103 Capsella grandiflora Cagra.0799s0103 N 0.885
Carubv10019871m.g Capsella rubella Carubv10019871m.g N 0.885
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.885
Eucgr.B03670 Eucalyptus grandis Eucgr.B03670 N 0.885
30106.m000672 Ricinus communis 30106.m000672 I 0.885
TCM_002030 Theobroma cacao TCM_002030 I 0.885
GLYMA15G03750 Glycine max GLYMA15G03750 N 0.885
Ca_02661 Cicer arietinum Ca_02661 N 0.885
GLYMA13G41660 Glycine max GLYMA13G41660 N 0.885
mgf009829m Mimulus guttatus mgf009829m I 0.856
mgf014333m Mimulus guttatus mgf014333m I 0.856
mgf008660m Mimulus guttatus mgf008660m N 0.846
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.846
Gorai.009G072000 Gossypium raimondii Gorai.009G072000 N 0.846
Bra031330 Brassica rapa Bra031330 I 0.846
Pm019586 Prunus mume Pm019586 N 0.846
PRUPE_ppa001996mg Prunus persica PRUPE_ppa001996mg N 0.846
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.846
Bo5g098280 Brassica oleracea Bo5g098280 I 0.833
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.808
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.808
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.808
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.808
MDP0000267783 Malus domestica MDP0000267783 N 0.808
TCM_040565 Theobroma cacao TCM_040565 N 0.808
SapurV1A.0009s0410 Salix purpurea SapurV1A.0009s0410 N 0.808
Pm014858 Prunus mume Pm014858 I 0.808
gene12562-v1.0-hybrid Fragaria vesca gene12562-v1.0-hybrid N 0.808
cassava38027.valid.m1 Manihot esculenta cassava38027.valid.m1 N 0.808
Bo1g105420 Brassica oleracea Bo1g105420 I 0.808
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.808
PK04639.1 Cannabis sativa PK04639.1 I 0.808
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.808
POPTR_0003s22300 Populus trichocarpa POPTR_0003s22300 N 0.808
FRS1 Populus trichocarpa POPTR_0003s10970 N 0.769
PK07805.1 Cannabis sativa PK07805.1 N 0.769
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.769
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.769
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.769
Gorai.001G213700 Gossypium raimondii Gorai.001G213700 N 0.769
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.769
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.769
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.750
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.739
FRS2 Vitis vinifera VIT_03s0017g01830 N 0.731
Pm014857 Prunus mume Pm014857 N 0.731
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.731
TCM_002031 Theobroma cacao TCM_002031 N 0.731
Solyc03g121630.2 Solanum lycopersicum Solyc03g121630.2 N 0.731
SapurV1A.0325s0180 Salix purpurea SapurV1A.0325s0180 N 0.731
Eucgr.D00033 Eucalyptus grandis Eucgr.D00033 N 0.731
PRUPE_ppa024183mg Prunus persica PRUPE_ppa024183mg N 0.731
Solyc02g068550.1 Solanum lycopersicum Solyc02g068550.1 N 0.731
Cucsa.048930 Cucumis sativus Cucsa.048930 N 0.731