TCM_013043 (Theobroma cacao)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 TCM_013043 T180493_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.889 0.889
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.923 0.923
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.846 0.846
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.846 0.846
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY21467 FAR1 89 191
EOY21468 FAR1 89 191
EOY21469 FAR1 1 26
EOY21470 FAR1 1 26
EOY21471 FAR1 89 191
EOY21472 FAR1 1 26
EOY21473 FAR1 89 191
EOY21474 FAR1 89 191
EOY21475 FAR1 1 26
EOY21476 FAR1 11 113

Links

Other FAR1 family TFs
Other Theobroma cacao TFs

Invalid Input OrderBy

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action