CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_013043
(
Theobroma cacao
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03101 (FAR1)
IPR004330
TCM_013043
T180493_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.889
0.889
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.923
0.923
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.846
0.846
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.846
0.846
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY21467
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21468
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21469
FAR1
1
26
MHVKRRPDGKWVVHSFVKEHNHELLP
EOY21470
FAR1
1
26
MHVKRRPDGKWVVHSFVKEHNHELLP
EOY21471
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21472
FAR1
1
26
MHVKRRPDGKWVVHSFVKEHNHELLP
EOY21473
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21474
FAR1
89
191
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
EOY21475
FAR1
1
26
MHVKRRPDGKWVVHSFVKEHNHELLP
EOY21476
FAR1
11
113
SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSFVKEHNHELLP
Links
Other
FAR1
family TFs
Other
Theobroma cacao
TFs
85 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy