FAR1 (Vitis vinifera)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 VIT_03s0017g01810 T180835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.876 0.876
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.876 0.876
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_03s0017g01810.t01 FAR1 48 136

Links

Other FAR1 family TFs
Other Vitis vinifera TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK04639.1 Cannabis sativa PK04639.1 I 0.955
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.955
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.944
Pm014858 Prunus mume Pm014858 I 0.944
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.943
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.933
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.933
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.932
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.932
TCM_002030 Theobroma cacao TCM_002030 I 0.921
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.921
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.921
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.921
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.921
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.921
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.910
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.910
30106.m000672 Ricinus communis 30106.m000672 I 0.910
mgf008053m Mimulus guttatus mgf008053m I 0.898
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.888
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.888
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.885
FAR1 Arabidopsis thaliana AT4G15090 D 0.867
Bo6g054750 Brassica oleracea Bo6g054750 I 0.856
Bra040696 Brassica rapa Bra040696 I 0.856
TCM_013043 Theobroma cacao TCM_013043 I 0.846
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.764
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.764
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.753
PK08903.1 Cannabis sativa PK08903.1 I 0.753
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.753
MDP0000286803 Malus domestica MDP0000286803 I 0.753
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.744
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.744
Pm014859 Prunus mume Pm014859 I 0.744
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.744
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.742
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.742
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.742
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.742
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.742
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.733
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.733
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.733
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.730
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.708