30106.m000672 (Ricinus communis)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 30106.m000672 T181019_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.909 0.909
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.909 0.909
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.727 0.727
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30106.m000672 FAR1 76 163

Links

Other FAR1 family TFs
Other Ricinus communis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.966
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.966
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.966
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.955
TCM_002030 Theobroma cacao TCM_002030 I 0.955
PK04639.1 Cannabis sativa PK04639.1 I 0.932
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.923
Pm014858 Prunus mume Pm014858 I 0.920
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.920
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.920
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.920
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.910
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.909
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.909
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.909
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.898
FAR1 Arabidopsis thaliana AT4G15090 D 0.889
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.889
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.888
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.888
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.888
TCM_013043 Theobroma cacao TCM_013043 I 0.885
mgf008053m Mimulus guttatus mgf008053m I 0.875
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.852
Bra040696 Brassica rapa Bra040696 I 0.822
Bo6g054750 Brassica oleracea Bo6g054750 I 0.822
MDP0000286803 Malus domestica MDP0000286803 I 0.784
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.773
PK08903.1 Cannabis sativa PK08903.1 I 0.773
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.773
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.773
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.773
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.773
Pm014859 Prunus mume Pm014859 I 0.767
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.767
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.767
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.756
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.756
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.756
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.756
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.756
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.750
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.744
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.744
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.733
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.733
FHY3 Arabidopsis thaliana AT3G22170 D 0.727
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.716
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.716
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.716
mgf009829m Mimulus guttatus mgf009829m I 0.711
mgf014333m Mimulus guttatus mgf014333m I 0.711
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.705