cassava31126.valid.m1 (Manihot esculenta)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 cassava31126.valid.m1 T181046_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.900 0.900
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.900 0.900
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava31126.valid.m1 FAR1 85 187

Links

Other FAR1 family TFs
Other Manihot esculenta TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 1.000
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 1.000
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 1.000
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 1.000
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.978
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.978
Pm014859 Prunus mume Pm014859 I 0.967
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.967
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.967
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.967
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.967
MDP0000286803 Malus domestica MDP0000286803 I 0.967
TCM_013043 Theobroma cacao TCM_013043 I 0.962
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.956
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.956
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.944
PK08903.1 Cannabis sativa PK08903.1 I 0.944
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.933
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.933
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.911
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.900
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.900
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.900
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.900
FHY3 Arabidopsis thaliana AT3G22170 D 0.900
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.889
mgf009829m Mimulus guttatus mgf009829m I 0.878
mgf014333m Mimulus guttatus mgf014333m I 0.878
Bra031330 Brassica rapa Bra031330 I 0.856
Bo5g098280 Brassica oleracea Bo5g098280 I 0.844
Bo1g105420 Brassica oleracea Bo1g105420 I 0.800
30106.m000672 Ricinus communis 30106.m000672 I 0.773
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.761
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.761
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.750
TCM_002030 Theobroma cacao TCM_002030 I 0.750
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.742
PK04639.1 Cannabis sativa PK04639.1 I 0.739
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.739
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.727
Pm014858 Prunus mume Pm014858 I 0.727
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.727
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.727
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.716
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.705
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.705
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.700