Cucsa.180080 (Cucumis sativus)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Cucsa.180080 T181081_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.900 0.900
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.900 0.900
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.700 0.700
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.180080.1 FAR1 88 190
Cucsa.180080.2 FAR1 88 190

Links

Other FAR1 family TFs
Other Cucumis sativus TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
FHY3 Arabidopsis thaliana AT3G22170 D 0.900
FAR1 Arabidopsis thaliana AT4G15090 D 0.700
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.889
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.700
Bo1g105420 Brassica oleracea Bo1g105420 I 0.789
Bo5g098280 Brassica oleracea Bo5g098280 I 0.833
Bra031330 Brassica rapa Bra031330 I 0.844
PK08903.1 Cannabis sativa PK08903.1 I 0.922
PK04639.1 Cannabis sativa PK04639.1 I 0.733
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.708
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.889
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.708
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.708
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.889
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.944
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.933
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.739
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.878
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.744
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.911
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.956
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.956
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.700
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.744
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.944
MDP0000286803 Malus domestica MDP0000286803 I 0.933
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.933
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.933
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.933
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.933
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.733
mgf014333m Mimulus guttatus mgf014333m I 0.889
mgf008053m Mimulus guttatus mgf008053m I 0.705
mgf009829m Mimulus guttatus mgf009829m I 0.889
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.761
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.944
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.922
Pm014858 Prunus mume Pm014858 I 0.733
Pm014859 Prunus mume Pm014859 I 0.933
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.933
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.733
30106.m000672 Ricinus communis 30106.m000672 I 0.744
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.962
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.750
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.911
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.911
TCM_013043 Theobroma cacao TCM_013043 I 0.923
TCM_002030 Theobroma cacao TCM_002030 I 0.733
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.944
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.744