CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.180090
(
Cucumis sativus
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03101 (FAR1)
IPR004330
Cucsa.180090
T181082_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.898
0.898
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.898
0.898
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.180090.1
FAR1
46
133
TFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWIIHEFIKDHNHELLP
Cucsa.180090.2
FAR1
46
133
TFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWIIHEFIKDHNHELLP
Cucsa.180090.3
FAR1
46
133
TFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWIIHEFIKDHNHELLP
Links
Other
FAR1
family TFs
Other
Cucumis sativus
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy