Carubv10013009m.g (Capsella rubella)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Carubv10013009m.g T181271_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.989 0.989
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.989 0.989
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013009m FAR1 92 194

Links

Other FAR1 family TFs
Other Capsella rubella TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
FHY3 Arabidopsis thaliana AT3G22170 D 0.989
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.900
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.889
mgf009829m Mimulus guttatus mgf009829m I 0.833
mgf014333m Mimulus guttatus mgf014333m I 0.833
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 1.000
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 1.000
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.867
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.900
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.856
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.900
MDP0000286803 Malus domestica MDP0000286803 I 0.889
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.867
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.716
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.962
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.989
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.900
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.900
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.900
Bo1g105420 Brassica oleracea Bo1g105420 I 0.867
Bo5g098280 Brassica oleracea Bo5g098280 I 0.922
Bra031330 Brassica rapa Bra031330 I 0.933
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.889
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.889
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.705
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.889
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.878
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.889
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.856
TCM_013043 Theobroma cacao TCM_013043 I 0.923
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.889
Pm014859 Prunus mume Pm014859 I 0.889
30106.m000672 Ricinus communis 30106.m000672 I 0.716
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.705
PK08903.1 Cannabis sativa PK08903.1 I 0.867