Eucgr.A00908 (Eucalyptus grandis)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Eucgr.A00908 T181330_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.878 0.878
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.878 0.878
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.700 0.700
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.A00908.1 FAR1 89 191
Eucgr.A00908.2 FAR1 89 191
Eucgr.A00908.3 FAR1 89 191

Links

Other FAR1 family TFs
Other Eucalyptus grandis TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK08903.1 Cannabis sativa PK08903.1 I 0.944
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.944
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.933
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.933
Pm014859 Prunus mume Pm014859 I 0.933
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.933
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.933
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.933
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.933
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.933
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.923
mgf009829m Mimulus guttatus mgf009829m I 0.922
MDP0000286803 Malus domestica MDP0000286803 I 0.922
TCM_013043 Theobroma cacao TCM_013043 I 0.922
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.922
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.922
mgf014333m Mimulus guttatus mgf014333m I 0.922
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.911
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.911
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.911
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.911
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.900
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.889
FHY3 Arabidopsis thaliana AT3G22170 D 0.878
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.867
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.867
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.867
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.856
Bra031330 Brassica rapa Bra031330 I 0.833
Bo5g098280 Brassica oleracea Bo5g098280 I 0.822
Bo1g105420 Brassica oleracea Bo1g105420 I 0.811
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.739
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.739
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.739
30106.m000672 Ricinus communis 30106.m000672 I 0.733
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.730
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.722
PK04639.1 Cannabis sativa PK04639.1 I 0.722
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.722
mgf008053m Mimulus guttatus mgf008053m I 0.716
Pm014858 Prunus mume Pm014858 I 0.711
TCM_002030 Theobroma cacao TCM_002030 I 0.711
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.711
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.711
FAR1 Arabidopsis thaliana AT4G15090 D 0.700
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.700