Eucgr.C04090 (Eucalyptus grandis)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Eucgr.C04090 T181341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.920 0.920
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.920 0.920
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.C04090.1 FAR1 61 148
Eucgr.C04090.2 FAR1 61 148

Links

Other FAR1 family TFs
Other Eucalyptus grandis TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30106.m000672 Ricinus communis 30106.m000672 I 0.920
Bo6g054750 Brassica oleracea Bo6g054750 I 0.844
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.920
Bra040696 Brassica rapa Bra040696 I 0.844
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.933
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.933
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.933
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.898
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.727
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.727
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.727
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.727
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.739
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.943
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.739
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.727
FAR1 Arabidopsis thaliana AT4G15090 D 0.900
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.943
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.739
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.711
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.943
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.750
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.750
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.920
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.909
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.739
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.943
MDP0000286803 Malus domestica MDP0000286803 I 0.739
mgf008053m Mimulus guttatus mgf008053m I 0.909
mgf009829m Mimulus guttatus mgf009829m I 0.716
mgf014333m Mimulus guttatus mgf014333m I 0.716
PK04639.1 Cannabis sativa PK04639.1 I 0.943
PK08903.1 Cannabis sativa PK08903.1 I 0.739
Pm014858 Prunus mume Pm014858 I 0.932
Pm014859 Prunus mume Pm014859 I 0.739
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.932
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.722
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.711
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.739
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.932
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.716
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.932
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.846
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.727
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.886
TCM_002030 Theobroma cacao TCM_002030 I 0.932
TCM_013043 Theobroma cacao TCM_013043 I 0.808
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.943