gene24215-v1.0-hybrid (Fragaria vesca)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 gene24215-v1.0-hybrid T181450_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.898 0.898
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.898 0.898
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.705 0.705
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna24215.1-v1.0-hybrid FAR1 76 163

Links

Other FAR1 family TFs
Other Fragaria vesca TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
WHY2 Arabidopsis thaliana AT1G71260 N 0.000
Bostr.10273s0220 Boechera stricta Bostr.10273s0220 N 0.000
Cagra.0147s0016 Capsella grandiflora Cagra.0147s0016 N 0.000
Carubv10020880m.g Capsella rubella Carubv10020880m.g N 0.000
cassava24783.valid.m1 Manihot esculenta cassava24783.valid.m1 N 0.000
chr1.LjT14G19.90.nc Lotus japonicus chr1.LjT14G19.90.nc N 0.000
Eucgr.K01091 Eucalyptus grandis Eucgr.K01091 N 0.000
evm.TU.supercontig_249.9 Carica papaya evm.TU.supercontig_249.9 N 0.000
GLYMA03G41270 Glycine max GLYMA03G41270 N 0.000
GLYMA19G43880 Glycine max GLYMA19G43880 N 0.000
Gorai.004G266000 Gossypium raimondii Gorai.004G266000 N 0.000
Lus10017892.g Linum usitatissimum Lus10017892.g N 0.000
Lus10035067.g Linum usitatissimum Lus10035067.g N 0.000
MDP0000168614 Malus domestica MDP0000168614 N 0.000
mgf015710m Mimulus guttatus mgf015710m N 0.000
MLOC_19666 Hordeum vulgare MLOC_19666 N 0.000
MTR_7g116270 Medicago truncatula MTR_7g116270 N 0.000
orange1.1g026312m.g Citrus sinensis orange1.1g026312m.g N 0.000
PGSC0003DMG400022930 Solanum tuberosum PGSC0003DMG400022930 N 0.000
PK20247.1 Cannabis sativa PK20247.1 N 0.000
Pm022821 Prunus mume Pm022821 N 0.000
ATWHY2 Populus trichocarpa POPTR_0003s04700 N 0.000
PRUPE_ppa011529mg Prunus persica PRUPE_ppa011529mg N 0.000
SapurV1A.0002s0060 Salix purpurea SapurV1A.0002s0060 N 0.000
ATWHY2 Arabidopsis lyrata scaffold_202038.1 N 0.000
Solyc11g044750.1 Solanum lycopersicum Solyc11g044750.1 N 0.000
TCM_035992 Theobroma cacao TCM_035992 N 0.000
Thhalv10019058m.g Eutrema salsugineum Thhalv10019058m.g N 0.000
ATWHY2 Vitis vinifera VIT_18s0089g00900 N 0.000