Gorai.005G134200 (Gossypium raimondii)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Gorai.005G134200 T181495_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.911 0.911
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.911 0.911
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.700 0.700
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G134200.10 FAR1 84 186
Gorai.005G134200.11 FAR1 84 186
Gorai.005G134200.1 FAR1 84 186
Gorai.005G134200.2 FAR1 84 186
Gorai.005G134200.3 FAR1 84 186
Gorai.005G134200.4 FAR1 84 186
Gorai.005G134200.5 FAR1 84 186
Gorai.005G134200.6 FAR1 84 186
Gorai.005G134200.7 FAR1 84 186
Gorai.005G134200.8 FAR1 84 186
Gorai.005G134200.9 FAR1 84 186

Links

Other FAR1 family TFs
Other Gossypium raimondii TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 1.000
Pm014859 Prunus mume Pm014859 I 0.989
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.989
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.978
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.978
MDP0000286803 Malus domestica MDP0000286803 I 0.978
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.978
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.978
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.978
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.978
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.978
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.967
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.967
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.967
TCM_013043 Theobroma cacao TCM_013043 I 0.967
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.956
PK08903.1 Cannabis sativa PK08903.1 I 0.956
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.956
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.944
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.933
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.922
FHY3 Arabidopsis thaliana AT3G22170 D 0.911
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.900
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.900
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.900
mgf014333m Mimulus guttatus mgf014333m I 0.889
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.889
mgf009829m Mimulus guttatus mgf009829m I 0.889
Bra031330 Brassica rapa Bra031330 I 0.856
Bo5g098280 Brassica oleracea Bo5g098280 I 0.844
Bo1g105420 Brassica oleracea Bo1g105420 I 0.789
30106.m000672 Ricinus communis 30106.m000672 I 0.767
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.761
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.756
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.756
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.753
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.750
TCM_002030 Theobroma cacao TCM_002030 I 0.744
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.739
PK04639.1 Cannabis sativa PK04639.1 I 0.733
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.722
Pm014858 Prunus mume Pm014858 I 0.722
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.722
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.711
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.711
mgf008053m Mimulus guttatus mgf008053m I 0.705
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.700
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.700
FAR1 Arabidopsis thaliana AT4G15090 D 0.700
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.700