MDP0000286803 (Malus domestica)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 MDP0000286803 T181580_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.900 0.900
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.900 0.900
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.700 0.700
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000286803 FAR1 89 191

Links

Other FAR1 family TFs
Other Malus domestica TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm014859 Prunus mume Pm014859 I 0.989
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.989
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.978
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.978
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.967
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.967
PK08903.1 Cannabis sativa PK08903.1 I 0.967
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.967
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.967
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.967
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.967
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.967
TCM_013043 Theobroma cacao TCM_013043 I 0.956
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.956
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.956
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.956
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.944
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.944
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.933
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.922
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.911
FHY3 Arabidopsis thaliana AT3G22170 D 0.900
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.889
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.889
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.889
mgf009829m Mimulus guttatus mgf009829m I 0.878
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.878
mgf014333m Mimulus guttatus mgf014333m I 0.878
Bra031330 Brassica rapa Bra031330 I 0.844
Bo5g098280 Brassica oleracea Bo5g098280 I 0.833
30106.m000672 Ricinus communis 30106.m000672 I 0.784
Bo1g105420 Brassica oleracea Bo1g105420 I 0.778
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.773
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.773
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.761
TCM_002030 Theobroma cacao TCM_002030 I 0.761
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.753
PK04639.1 Cannabis sativa PK04639.1 I 0.750
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.750
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.739
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.739
Pm014858 Prunus mume Pm014858 I 0.739
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.739
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.727
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.716
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.716
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.711
mgf008053m Mimulus guttatus mgf008053m I 0.705
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.705
FAR1 Arabidopsis thaliana AT4G15090 D 0.700
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.700