SapurV1A.0767s0090 (Salix purpurea)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 SapurV1A.0767s0090 T181927_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.920 0.920
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.920 0.920
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.727 0.727
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0767s0090.1.p FAR1 73 160
SapurV1A.0767s0090.2.p FAR1 73 160
SapurV1A.0767s0090.3.p FAR1 73 160
SapurV1A.0767s0090.4.p FAR1 73 160
SapurV1A.0767s0090.5.p FAR1 73 160

Links

Other FAR1 family TFs
Other Salix purpurea TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.989
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.966
30106.m000672 Ricinus communis 30106.m000672 I 0.966
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.955
Pm014858 Prunus mume Pm014858 I 0.955
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.955
TCM_002030 Theobroma cacao TCM_002030 I 0.955
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.943
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.932
PK04639.1 Cannabis sativa PK04639.1 I 0.932
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.932
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.923
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.920
FAR1 Arabidopsis thaliana AT4G15090 D 0.920
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.920
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.920
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.909
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.909
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.909
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.909
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.898
mgf008053m Mimulus guttatus mgf008053m I 0.898
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.852
Bra040696 Brassica rapa Bra040696 I 0.833
Bo6g054750 Brassica oleracea Bo6g054750 I 0.833
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.761
MDP0000286803 Malus domestica MDP0000286803 I 0.761
Pm014859 Prunus mume Pm014859 I 0.761
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.761
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.750
PK08903.1 Cannabis sativa PK08903.1 I 0.750
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.750
TCM_013043 Theobroma cacao TCM_013043 I 0.750
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.750
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.750
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.750
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.750
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.750
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.750
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.750
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.750
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.750
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.739
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.739
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.739
FHY3 Arabidopsis thaliana AT3G22170 D 0.727
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.722
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.716
mgf009829m Mimulus guttatus mgf009829m I 0.716
mgf014333m Mimulus guttatus mgf014333m I 0.716
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.716
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.716
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.705