SapurV1A.0767s0100 (Salix purpurea)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 SapurV1A.0767s0100 T181928_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.962 0.962
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.911 0.911
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.700 0.700
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0767s0100.1.p FAR1 87 189
SapurV1A.0767s0100.2.p FAR1 87 189
SapurV1A.0767s0100.3.p FAR1 87 189
SapurV1A.0767s0100.4.p FAR1 87 189
SapurV1A.0767s0100.5.p FAR1 1 26
SapurV1A.0767s0100.6.p FAR1 1 26

Links

Other FAR1 family TFs
Other Salix purpurea TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 1.000
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 1.000
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 1.000
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 1.000
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 1.000
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.989
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.978
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.978
Pm014859 Prunus mume Pm014859 I 0.978
MDP0000286803 Malus domestica MDP0000286803 I 0.978
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.978
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.978
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.967
TCM_013043 Theobroma cacao TCM_013043 I 0.967
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.967
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.962
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.962
FHY3 Arabidopsis thaliana AT3G22170 D 0.962
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.962
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.962
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.962
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.962
PK08903.1 Cannabis sativa PK08903.1 I 0.956
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.944
30106.m000672 Ricinus communis 30106.m000672 I 0.923
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.923
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.923
TCM_002030 Theobroma cacao TCM_002030 I 0.923
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.923
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.911
mgf008660m Mimulus guttatus mgf008660m N 0.885
Bra031330 Brassica rapa Bra031330 I 0.885
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.885
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.885
FAR1 Arabidopsis thaliana AT4G15090 D 0.885
Thhalv10018262m.g Eutrema salsugineum Thhalv10018262m.g N 0.885
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.885
mgf014333m Mimulus guttatus mgf014333m I 0.878
mgf009829m Mimulus guttatus mgf009829m I 0.878
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.846
Eucgr.B03670 Eucalyptus grandis Eucgr.B03670 N 0.846
Carubv10019871m.g Capsella rubella Carubv10019871m.g N 0.846
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.846
Cagra.0799s0103 Capsella grandiflora Cagra.0799s0103 N 0.846
Bostr.20129s0070 Boechera stricta Bostr.20129s0070 N 0.846
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.846
SapurV1A.0009s0410 Salix purpurea SapurV1A.0009s0410 N 0.846
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.846
PK04639.1 Cannabis sativa PK04639.1 I 0.846
POPTR_0003s22300 Populus trichocarpa POPTR_0003s22300 N 0.846
GLYMA15G03750 Glycine max GLYMA15G03750 N 0.846
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.846
GLYMA13G41660 Glycine max GLYMA13G41660 N 0.846
cassava38027.valid.m1 Manihot esculenta cassava38027.valid.m1 N 0.846
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.846
Ca_02661 Cicer arietinum Ca_02661 N 0.846
Bo5g098280 Brassica oleracea Bo5g098280 I 0.846
Bo6g120360 Brassica oleracea Bo6g120360 N 0.846
FRS4 Arabidopsis thaliana AT1G76320 N 0.846
Pm014858 Prunus mume Pm014858 I 0.846
Bo1g105420 Brassica oleracea Bo1g105420 I 0.846
PK07805.1 Cannabis sativa PK07805.1 N 0.808
Gorai.009G072000 Gossypium raimondii Gorai.009G072000 N 0.808
Gorai.001G213700 Gossypium raimondii Gorai.001G213700 N 0.808
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.808
PRUPE_ppa001996mg Prunus persica PRUPE_ppa001996mg N 0.808
Pm019586 Prunus mume Pm019586 N 0.808
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.808
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.808
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.808
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.808
Solyc03g121630.2 Solanum lycopersicum Solyc03g121630.2 N 0.769
TCM_002031 Theobroma cacao TCM_002031 N 0.769
Solyc02g068550.1 Solanum lycopersicum Solyc02g068550.1 N 0.769
TCM_040565 Theobroma cacao TCM_040565 N 0.769
FRS2 Vitis vinifera VIT_03s0017g01830 N 0.769
MDP0000267783 Malus domestica MDP0000267783 N 0.769
Eucgr.D00033 Eucalyptus grandis Eucgr.D00033 N 0.769
gene12562-v1.0-hybrid Fragaria vesca gene12562-v1.0-hybrid N 0.769
FRS1 Populus trichocarpa POPTR_0003s10970 N 0.731
FRS1 Vitis vinifera VIT_01s0011g01470 N 0.731
mgf008053m Mimulus guttatus mgf008053m I 0.705