SapurV1A.0767s0100 (Salix purpurea)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 SapurV1A.0767s0100 T181928_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.911 0.911
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.911 0.911
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.700 0.700
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0767s0100.1.p FAR1 87 189
SapurV1A.0767s0100.2.p FAR1 87 189
SapurV1A.0767s0100.3.p FAR1 87 189
SapurV1A.0767s0100.4.p FAR1 87 189
SapurV1A.0767s0100.5.p FAR1 1 26
SapurV1A.0767s0100.6.p FAR1 1 26

Links

Other FAR1 family TFs
Other Salix purpurea TFs

Invalid Input OrderBy

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action