Thhalv10020053m.g (Eutrema salsugineum)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Thhalv10020053m.g T181959_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.978 0.978
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.978 0.978
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10020053m FAR1 91 193
Thhalv10020054m FAR1 91 193

Links

Other FAR1 family TFs
Other Eutrema salsugineum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.989
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.989
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.989
FHY3 Arabidopsis thaliana AT3G22170 D 0.978
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.962
TCM_013043 Theobroma cacao TCM_013043 I 0.923
Bra031330 Brassica rapa Bra031330 I 0.922
Bo5g098280 Brassica oleracea Bo5g098280 I 0.911
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.889
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.889
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.889
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.889
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.889
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.889
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.878
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.878
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.878
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.878
MDP0000286803 Malus domestica MDP0000286803 I 0.878
Pm014859 Prunus mume Pm014859 I 0.878
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.878
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.878
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.867
Bo1g105420 Brassica oleracea Bo1g105420 I 0.856
PK08903.1 Cannabis sativa PK08903.1 I 0.856
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.856
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.856
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.844
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.844
mgf009829m Mimulus guttatus mgf009829m I 0.822
mgf014333m Mimulus guttatus mgf014333m I 0.822
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.705
30106.m000672 Ricinus communis 30106.m000672 I 0.705