Thhalv10024410m.g (Eutrema salsugineum)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Thhalv10024410m.g T181963_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.944 0.944
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.944 0.944
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10024410m FAR1 66 156

Links

Other FAR1 family TFs
Other Eutrema salsugineum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.966
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.966
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.966
FAR1 Arabidopsis thaliana AT4G15090 D 0.944
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.944
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.943
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.932
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.932
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.932
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.921
TCM_002030 Theobroma cacao TCM_002030 I 0.920
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.920
PK04639.1 Cannabis sativa PK04639.1 I 0.920
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.920
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.920
Bo6g054750 Brassica oleracea Bo6g054750 I 0.911
Bra040696 Brassica rapa Bra040696 I 0.911
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.909
30106.m000672 Ricinus communis 30106.m000672 I 0.909
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.909
Pm014858 Prunus mume Pm014858 I 0.909
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.909
mgf008053m Mimulus guttatus mgf008053m I 0.886
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.864
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.846
TCM_013043 Theobroma cacao TCM_013043 I 0.808
evm.TU.contig_36258 Carica papaya evm.TU.contig_36258 I 0.769
MDP0000286803 Malus domestica MDP0000286803 I 0.700
Pm014859 Prunus mume Pm014859 I 0.700
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.700
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.700
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.700
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.700
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.700