CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_70827
(
Hordeum vulgare
)
FAR1,GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03101 (FAR1)
PF00320 (GATA)
IPR004330
IPR000679
MLOC_70827
T182283_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_70827.2
GATA
108
145
CLRCGISGNATPHMRRGPDGPRTLCNACGIAYRKGKMR
MLOC_70827.2
FAR1
178
265
EFYNKYAGHVGFSVRKSTSHKSSENITKVRTFVCSREGYNRDKKSLEAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQLAP
MLOC_70827.3
FAR1
35
122
EFYNKYAGHVGFSVRKSTSHKSSENITKVRTFVCSREGYNRDKKSLEAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQLAP
Links
Other
FAR1,GATA
family TFs
Other
Hordeum vulgare
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_2DS_C83B7F5CF
Triticum aestivum
Traes_2DS_C83B7F5CF
N
1.000
TRIUR3_17271
Triticum urartu
TRIUR3_17271
N
1.000
Traes_2BS_59D534318
Triticum aestivum
Traes_2BS_59D534318
N
1.000
Traes_2AS_3DDBFDD8D
Triticum aestivum
Traes_2AS_3DDBFDD8D
N
1.000
OB07G27730
Oryza brachyantha
OB07G27730
N
0.992
Pavir.Ba00417
Panicum virgatum
Pavir.Ba00417
N
0.992
Pavir.Bb03328
Panicum virgatum
Pavir.Bb03328
N
0.992
BRADI1G20830
Brachypodium distachyon
BRADI1G20830
N
0.992
GRMZM2G114461
Zea mays
GRMZM2G114461
N
0.992
BGIOSGA026135
Oryza indica
BGIOSGA026135
N
0.984
OS07G0615900
Oryza sativa
OS07G0615900
N
0.976
ORGLA07G0170400
Oryza glaberrima
ORGLA07G0170400
N
0.976
GSMUA_Achr2G15020_001
Musa acuminata
GSMUA_Achr2G15020_001
N
0.744
Traes_4DL_C77385A0D
Triticum aestivum
Traes_4DL_C77385A0D
N
0.726
OS03G0181600
Oryza sativa
OS03G0181600
N
0.726
ORGLA03G0057700
Oryza glaberrima
ORGLA03G0057700
N
0.726
BGIOSGA011986
Oryza indica
BGIOSGA011986
N
0.726
Traes_4AS_124CCE880
Triticum aestivum
Traes_4AS_124CCE880
N
0.720
OB03G16050
Oryza brachyantha
OB03G16050
N
0.711
Traes_5BL_FC8AB1380
Triticum aestivum
Traes_5BL_FC8AB1380
N
0.700