RO3G_04419 (Rhizopus oryzae)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 RO3G_04419 T184391_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HCM1
M00044_2.00
Saccharomyces cerevisiae
NRWHAACAN

NTGTTDWYN
PBM
Badis et al.(2008)
HCM1_2157
0.706 0.570
HCM1
M07473_2.00
Saccharomyces cerevisiae
VWMAACAH

DTGTTKWB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0317.1
0.706 0.570
HCM1
M08554_2.00
Saccharomyces cerevisiae
VWMAACAH

DTGTTKWB
Misc
DeBoer et al.(2011)
YCR065W_570
0.706 0.570
NCU06173
M01992_2.00
Neurospora crassa
RTAAACAH

DTGTTTAY
PBM
Weirauch et al.(2014)
pTH8896
0.683 0.570
SPU_025010
M01988_2.00
Strongylocentrotus purpuratus
NNVNHHAYAN

NTRTDDNBNN
PBM
Weirauch et al.(2014)
pTH6641
0.679 0.570
Foxp2
M00792_2.00
Mus musculus
RTAAACAD

HTGTTTAY
PBM
Weirauch et al.(2013)
pTH1288
0.675 0.384
FOXP2
M05866_2.00
Homo sapiens
RTAAAYAWNN

NNWTRTTTAY
SMiLE-seq
Isakova et al.(2017)
FOXP2
0.675 0.384
FOXP2
M08116_2.00
Homo sapiens
NDGTAAACAVN

NBTGTTTACHN
ChIP-seq
Mathelier et al.(2014)
MA0593.1
0.675 0.384
FOXP2
M09089_2.00
Homo sapiens
DGTAAACAV

BTGTTTACH
Misc
Kulakovskiy et al.(2013)
FOXP2_HUMAN.H11MO.0.C
0.675 0.384
Foxp2
M09101_2.00
Mus musculus
NGTAAACAN

NTGTTTACN
Misc
Kulakovskiy et al.(2013)
FOXP2_MOUSE.H11MO.0.A
0.675 0.384
Foxk1
M00163_2.00
Mus musculus
RWMAACAA

TTGTTKWY
PBM
Badis et al.(2009)
Foxk1_2323
0.671 0.570
Foxk1
M03061_2.00
Mus musculus
CGGACACAATC

GATTGTGTCCG
SELEX
Jolma et al.(2013)
Foxk1_1
0.671 0.570
Foxk1
M03062_2.00
Mus musculus
RTAAACA

TGTTTAY
SELEX
Jolma et al.(2013)
Foxk1_2
0.671 0.570
Foxk1
M09113_2.00
Mus musculus
NNGDMAACAVV

BBTGTTKHCNN
Misc
Kulakovskiy et al.(2013)
FOXK1_MOUSE.H11MO.0.A
0.671 0.570
FOXK1
M01977_2.00
Homo sapiens
NNRWMMAYAN

NTRTKKWYNN
PBM
Weirauch et al.(2014)
pTH6108
0.671 0.558
FOXK1
M03025_2.00
Homo sapiens
CGGACACAAT

ATTGTGTCCG
SELEX
Jolma et al.(2013)
FOXK1_1
0.671 0.558
FOXK1
M04825_2.00
Homo sapiens
NDNRTMAAYAN

NTRTTKAYNHN
SELEX
Yin et al.(2017)
FOXK1_eDBD_HT-SELEX
0.671 0.558
FOXK1
M08120_2.00
Homo sapiens
NNNGTAAACANVNN

NNBNTGTTTACNNN
ChIP-seq
Mathelier et al.(2014)
MA0852.2
0.671 0.558
FOXK1
M09094_2.00
Homo sapiens
VNDRDAAACA

TGTTTHYHNB
Misc
Kulakovskiy et al.(2013)
FOXK1_HUMAN.H11MO.0.A
0.671 0.558
FOXK1
M04826_2.00
Homo sapiens
NWYRYAAWYAD

HTRWTTRYRWN
SELEX
Yin et al.(2017)
FOXK1_eDBD_Methyl-HT-SELEX
0.671 0.558
FOXI1
M03026_2.00
Homo sapiens
GTAAACA

TGTTTAC
SELEX
Jolma et al.(2013)
FOXI1_1
0.669 0.581
FOXI1
M03027_2.00
Homo sapiens
RTGTKTACGGTAAACAA

TTGTTTACCGTAMACAY
SELEX
Jolma et al.(2013)
FOXI1_2
0.669 0.581
FOXI1
M04827_2.00
Homo sapiens
NNNNNRTMAACAN

NTGTTKAYNNNNN
SELEX
Yin et al.(2017)
FOXI1_eDBD_HT-SELEX
0.669 0.581
FOXI1
M04829_2.00
Homo sapiens
AAYGTAAACAMW

WKTGTTTACRTT
SELEX
Yin et al.(2017)
FOXI1_FL_HT-SELEX
0.669 0.581
FOXI1
M09095_2.00
Homo sapiens
RRCCAATCAVAD

HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_HUMAN.H11MO.0.B
0.669 0.581
Foxi1
M09109_2.00
Mus musculus
RRCCAATCAVAD

HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_MOUSE.H11MO.0.B
0.669 0.581
FOXI1
M10556_2.00
Homo sapiens
HAWAYAAAYAHVH

DBDTRTTTRTWTD
Transfac
Matys et al.(2006)
V$HFH3_01
0.669 0.581
FOXI1
M04828_2.00
Homo sapiens
NWWVHRTAAACAH

DTGTTTAYDBWWN
SELEX
Yin et al.(2017)
FOXI1_eDBD_Methyl-HT-SELEX
0.669 0.581
FOXI1
M04830_2.00
Homo sapiens
AAYRTAAACAAW

WTTGTTTAYRTT
SELEX
Yin et al.(2017)
FOXI1_FL_Methyl-HT-SELEX
0.669 0.581
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RO3T_04418 Forkhead 71 163

Links

Other Forkhead family TFs
Other Rhizopus oryzae TFs

Invalid Input OrderBy

430 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action