CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSGMOG00000019598
(
Gadus morhua
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
ENSGMOG00000019598
T185975_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FOXG1
M01978_2.00
Homo sapiens
RTAAACAH
DTGTTTAY
PBM
Weirauch et al.(2014)
pTH5501
0.812
0.953
Foxg1
M00791_2.00
Mus musculus
NNNNMHAYAN
NTRTDKNNNN
PBM
Weirauch et al.(2013)
pTH2846
0.812
0.953
FOXG1
M03032_2.00
Homo sapiens
RTAAACAATDGTAAACA
TGTTTACHATTGTTTAY
SELEX
Jolma et al.(2013)
FOXG1_1
0.812
0.953
FOXG1
M03033_2.00
Homo sapiens
RCGGACACAATR
YATTGTGTCCGY
SELEX
Jolma et al.(2013)
FOXG1_2
0.812
0.953
Foxg1
M03052_2.00
Mus musculus
ATAAACAAVTGTMAACA
TGTTKACABTTGTTTAT
SELEX
Jolma et al.(2013)
Foxg1_1
0.812
0.953
Foxg1
M03053_2.00
Mus musculus
MHGGACACAATC
GATTGTGTCCDK
SELEX
Jolma et al.(2013)
Foxg1_2
0.812
0.953
Foxg1
M03054_2.00
Mus musculus
GTAAACA
TGTTTAC
SELEX
Jolma et al.(2013)
Foxg1_3
0.812
0.953
FOXG1
M04839_2.00
Homo sapiens
NACRYMMACAH
DTGTKKRYGTN
SELEX
Yin et al.(2017)
FOXG1_eDBD_HT-SELEX
0.812
0.953
FOXG1
M04840_2.00
Homo sapiens
HRCGYMAACAH
DTGTTKRCGYD
SELEX
Yin et al.(2017)
FOXG1_eDBD_Methyl-HT-SELEX
0.812
0.953
foxg1a
M01985_2.00
Oryzias latipes
RTAAACAH
DTGTTTAY
PBM
Weirauch et al.(2014)
pTH6729
0.800
0.872
slp1
M01986_2.00
Drosophila melanogaster
NRTAAACANN
NNTGTTTAYN
PBM
Weirauch et al.(2014)
pTH6549
0.787
0.721
slp1
M03736_2.00
Drosophila melanogaster
WDYRTAAACAWW
WWTGTTTAYRHW
SELEX
Nitta et al.(2015)
slp1_1
0.787
0.721
slp1
M03737_2.00
Drosophila melanogaster
RTRTAAACAAAYADH
DHTRTTTGTTTAYAY
SELEX
Nitta et al.(2015)
slp1_2
0.787
0.721
slp1
M06474_2.00
Drosophila melanogaster
WRBVWAAACAH
DTGTTTWBVYW
B1H
Mathelier et al.(2014)
MA0458.1
0.787
0.721
slp1
M06195_2.00
Drosophila melanogaster
WRBVWAAACAH
DTGTTTWBVYW
B1H
Zhu et al.(2011)
slp1_NAR_FBgn0003430
0.787
0.721
slp1
M09669_2.00
Drosophila melanogaster
ATGTMAACAMAVV
BBTKTGTTKACAT
Misc
Kulakovskiy et al.(2009)
slp1
0.787
0.721
CBG14280
M01974_2.00
Caenorhabditis briggsae
RTAAACAN
NTGTTTAY
PBM
Weirauch et al.(2014)
pTH6734
0.782
0.744
slp2
M03738_2.00
Drosophila melanogaster
NNTRTTTACAACAHN
NDTGTTGTAAAYANN
SELEX
Nitta et al.(2015)
slp2_1
0.768
0.860
slp2
M06196_2.00
Drosophila melanogaster
RTAAACAV
BTGTTTAY
B1H
Zhu et al.(2011)
slp2_SANGER_5_FBgn0004567
0.768
0.860
FOXI1
M03026_2.00
Homo sapiens
GTAAACA
TGTTTAC
SELEX
Jolma et al.(2013)
FOXI1_1
0.728
0.640
FOXI1
M03027_2.00
Homo sapiens
RTGTKTACGGTAAACAA
TTGTTTACCGTAMACAY
SELEX
Jolma et al.(2013)
FOXI1_2
0.728
0.640
FOXI1
M04827_2.00
Homo sapiens
NNNNNRTMAACAN
NTGTTKAYNNNNN
SELEX
Yin et al.(2017)
FOXI1_eDBD_HT-SELEX
0.728
0.640
FOXI1
M04829_2.00
Homo sapiens
AAYGTAAACAMW
WKTGTTTACRTT
SELEX
Yin et al.(2017)
FOXI1_FL_HT-SELEX
0.728
0.640
FOXI1
M09095_2.00
Homo sapiens
RRCCAATCAVAD
HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_HUMAN.H11MO.0.B
0.728
0.640
FOXI1
M10556_2.00
Homo sapiens
HAWAYAAAYAHVH
DBDTRTTTRTWTD
Transfac
Matys et al.(2006)
V$HFH3_01
0.728
0.640
FOXI1
M04828_2.00
Homo sapiens
NWWVHRTAAACAH
DTGTTTAYDBWWN
SELEX
Yin et al.(2017)
FOXI1_eDBD_Methyl-HT-SELEX
0.728
0.640
FOXI1
M04830_2.00
Homo sapiens
AAYRTAAACAAW
WTTGTTTAYRTT
SELEX
Yin et al.(2017)
FOXI1_FL_Methyl-HT-SELEX
0.728
0.640
Foxi1
M09109_2.00
Mus musculus
RRCCAATCAVAD
HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_MOUSE.H11MO.0.B
0.728
0.628
fd64A
M06197_2.00
Drosophila melanogaster
KVWAAACA
TGTTTWBM
B1H
Zhu et al.(2011)
fd64A_SANGER_5_FBgn0004895
0.697
0.698
Gm5294
M01984_2.00
Mus musculus
NNKRTAAACANN
NNTGTTTAYMNN
PBM
Weirauch et al.(2014)
pTH3802
0.681
0.593
FOXC1
M00257_2.00
Homo sapiens
NNNVHHAAYA
TRTTDDBNNN
PBM
Barrera et al.(2016)
FOXC1_REF
0.670
0.674
Foxc1
M01982_2.00
Mus musculus
HNNRHMAAYA
TRTTKDYNND
PBM
Weirauch et al.(2014)
pTH2673
0.670
0.674
FOXC1
M03013_2.00
Homo sapiens
AWRTAAAYAAAYA
TRTTTRTTTAYWT
SELEX
Jolma et al.(2013)
FOXC1_1
0.670
0.674
FOXC1
M03014_2.00
Homo sapiens
NRWMAATATTKWYN
NRWMAATATTKWYN
SELEX
Jolma et al.(2013)
FOXC1_2
0.670
0.674
FOXC1
M03015_2.00
Homo sapiens
WRWRTMAAYAW
WTRTTKAYWYW
SELEX
Jolma et al.(2013)
FOXC1_3
0.670
0.674
Foxc1
M03059_2.00
Mus musculus
RTAAAYAAACA
TGTTTRTTTAY
SELEX
Jolma et al.(2013)
Foxc1_1
0.670
0.674
Foxc1
M03060_2.00
Mus musculus
RTAAACA
TGTTTAY
SELEX
Jolma et al.(2013)
Foxc1_2
0.670
0.674
FOXC1
M09083_2.00
Homo sapiens
SBWAWRTAAACADHN
NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_HUMAN.H11MO.0.C
0.670
0.674
Foxc1
M09111_2.00
Mus musculus
SBWAWRTAAACADHN
NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_MOUSE.H11MO.0.C
0.670
0.674
FOXC1
M10525_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXC1_Q4
0.670
0.674
FOXC1
M10526_2.00
Homo sapiens
TSTTTATTTACDBNVN
NBNVHGTAAATAAASA
Transfac
Matys et al.(2006)
V$FREAC3_01
0.670
0.674
FOXC1
M00253_2.00
Homo sapiens
NNHATAAWHAN
NTDWTTATDNN
PBM
Barrera et al.(2016)
FOXC1_F112S
0.670
0.663
FOXC1
M00255_2.00
Homo sapiens
NRTATATWHNNN
NNNDWATATAYN
PBM
Barrera et al.(2016)
FOXC1_L130F
0.670
0.663
FOXC1
M00256_2.00
Homo sapiens
NNNNWWTYAMAWN
NWTKTRAWWNNNN
PBM
Barrera et al.(2016)
FOXC1_P79L
0.670
0.663
FOXC1
M00258_2.00
Homo sapiens
NNNAMAAYANN
NNTRTTKTNNN
PBM
Barrera et al.(2016)
FOXC1_S131L
0.670
0.663
FOXC1
M00259_2.00
Homo sapiens
RTAAACAW
WTGTTTAY
PBM
Barrera et al.(2016)
FOXC1_S82T
0.670
0.663
Foxl1
M00164_2.00
Mus musculus
NNNRTMAAYA
TRTTKAYNNN
PBM
Badis et al.(2009)
Foxl1_2809
0.670
0.674
FOXL1
M03034_2.00
Homo sapiens
RTAAACA
TGTTTAY
SELEX
Jolma et al.(2013)
FOXL1_1
0.670
0.674
FOXL1
M03035_2.00
Homo sapiens
NRTAAAYAAAYAN
NTRTTTRTTTAYN
SELEX
Jolma et al.(2013)
FOXL1_2
0.670
0.674
FOXL1
M10558_2.00
Homo sapiens
DHNVHATAAAYAHNNN
NNNDTRTTTATDBNDH
Transfac
Matys et al.(2006)
V$FREAC7_01
0.670
0.674
Foxj2
M01980_2.00
Mus musculus
RTAAACAN
NTGTTTAY
PBM
Weirauch et al.(2014)
pTH6638
0.669
0.581
FOXE1
M04845_2.00
Homo sapiens
BVYTAWRYAAACADN
NHTGTTTRYWTARBV
SELEX
Yin et al.(2017)
FOXE1_eDBD_HT-SELEX
0.668
0.616
FOXE1
M04846_2.00
Homo sapiens
BVYTAARYAAACAWH
DWTGTTTRYTTARBV
SELEX
Yin et al.(2017)
FOXE1_eDBD_Methyl-HT-SELEX
0.668
0.616
FOXD4L4
M10564_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXD4L4_01
0.666
0.663
FOXD2
M03042_2.00
Homo sapiens
NRTMAAYRTTWDYN
NRHWAAYRTTKAYN
SELEX
Jolma et al.(2013)
FOXD2_1
0.664
0.686
FOXD2
M03043_2.00
Homo sapiens
RTAAAYA
TRTTTAY
SELEX
Jolma et al.(2013)
FOXD2_2
0.664
0.686
FOXD2
M04851_2.00
Homo sapiens
HWASAATAAYAWWN
NWWTRTTATTSTWD
SELEX
Yin et al.(2017)
FOXD2_eDBD_HT-SELEX_1
0.664
0.686
FOXD2
M04852_2.00
Homo sapiens
VYWANRTAAAYAH
DTRTTTAYNTWRB
SELEX
Yin et al.(2017)
FOXD2_eDBD_HT-SELEX_2
0.664
0.686
FOXD1
M02681_2.00
Homo sapiens
GTAAACAD
HTGTTTAC
SELEX
Mathelier et al.(2014)
MA0031.1
0.664
0.686
Foxd1
M10570_2.00
Mus musculus
SYWAWGTAAACADHVN
NBDHTGTTTACWTWRS
Transfac
Matys et al.(2006)
V$FREAC4_01
0.664
0.686
FOXD1
M10567_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FREAC4_02
0.664
0.686
FOXD2
M04853_2.00
Homo sapiens
HWACAATAACRWWN
NWWYGTTATTGTWD
SELEX
Yin et al.(2017)
FOXD2_eDBD_Methyl-HT-SELEX_1
0.664
0.686
FOXD2
M04854_2.00
Homo sapiens
RYTRNGTMAACRD
HYGTTKACNYARY
SELEX
Yin et al.(2017)
FOXD2_eDBD_Methyl-HT-SELEX_2
0.664
0.686
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGMOP00000021077
Forkhead
39
127
KPPFSYNALIMMAIRGSPGKRLTLNGIYEFIMKNFPYYREHRQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT
Links
Other
Forkhead
family TFs
Other
Gadus morhua
TFs
779 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy