Foxn3 (Mus musculus)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00250 (Forkhead) IPR001766 ENSMUSG00000033713 T186348_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity; cis-regulatory region sequence-specific DNA binding activity; and protein C-terminus binding activity. Acts upstream of or within craniofacial suture morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; genitourinary system; immune system; peripheral nervous system; and sensory organ. Orthologous to human FOXN3 (forkhead box N3). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FOXN3
M01227_2.00 		Homo sapiens
GTAAACAA
TTGTTTAC		 PBM
Lambert et al.(2019)
pTH11266 		0.469 1.000
NEMVEDRAFT_v1g67209
M01016_2.00 		Nematostella vectensis
NNDWHRMNNN
NNNKYDWHNN		 PBM
Nakagawa et al.(2013)
FoxN2-3_Nvec 		0.767 0.792
FOXN2
M01007_2.00 		Homo sapiens
NNGACGCNN
NNGCGTCNN		 PBM
Nakagawa et al.(2013)
FOXN2 		0.708 0.766
FOXN2
M04835_2.00 		Homo sapiens
NNGCGTSNNNNNSACGCNN
NNGCGTSNNNNNSACGCNN		 SELEX
Yin et al.(2017)
FOXN2_eDBD_HT-SELEX 		0.708 0.766
FOXN2
M04836_2.00 		Homo sapiens
NGCATMRBNNYKATGCH
DGCATMRNNVYKATGCN		 SELEX
Yin et al.(2017)
FOXN2_eDBD_Methyl-HT-SELEX 		0.723 0.767
CHES-1-like
M01013_2.00 		Drosophila melanogaster
NNNHHRMNNN
NNNKYDDNNN		 PBM
Nakagawa et al.(2013)
CHES-1-like 		0.686 0.709
CHES-1-like
M03745_2.00 		Drosophila melanogaster
DHRTAAACAAW
WTTGTTTAYDH		 SELEX
Nitta et al.(2015)
CHES-1-like_1 		0.686 0.709
CHES-1-like
M03746_2.00 		Drosophila melanogaster
GCGTCNNYRTAAACAAW
WTTGTTTAYRNNGACGC		 SELEX
Nitta et al.(2015)
CHES-1-like_2 		0.673 0.714
CHES-1-like
M03747_2.00 		Drosophila melanogaster
WNVGCGTCHWNGACGCNNW
WNNGCGTCNWDGACGCBNW		 SELEX
Nitta et al.(2015)
CHES-1-like_3 		0.673 0.714
CHES-1-like
M03748_2.00 		Drosophila melanogaster
DNGCGTCHNNDGACGCNN
NNGCGTCHNNDGACGCNH		 SELEX
Nitta et al.(2015)
CHES-1-like_4 		0.673 0.714
CHES-1-like
M03749_2.00 		Drosophila melanogaster
HNGCGTCHNGACGCNN
NNGCGTCNDGACGCND		 SELEX
Nitta et al.(2015)
CHES-1-like_5 		0.673 0.714
TriadG17577
M01018_2.00 		Trichoplax adhaerens
NNNHHDNNNN
NNNNHDDNNN		 PBM
Nakagawa et al.(2013)
FoxN2_3 		0.664 0.779
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000036035 Forkhead 114 204
ENSMUSP00000082189 Forkhead 114 204
ENSMUSP00000135082 Forkhead 114 204
ENSMUSP00000135749 Forkhead 114 155
ENSMUSP00000135814 Forkhead 114 191

Links

Other Forkhead family TFs
Other Mus musculus TFs

Invalid Input OrderBy

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action