CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Foxn2
(
Mus musculus
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
ENSMUSG00000034998
T186351_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within skeletal muscle cell differentiation. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; branchial arch; genitourinary system; limb bud; and nervous system. Orthologous to human FOXN2 (forkhead box N2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FOXN2
M01007_2.00
Homo sapiens
NNGACGCNN
NNGCGTCNN
PBM
Nakagawa et al.(2013)
FOXN2
0.803
0.807
FOXN2
M04835_2.00
Homo sapiens
NNGCGTSNNNNNSACGCNN
NNGCGTSNNNNNSACGCNN
SELEX
Yin et al.(2017)
FOXN2_eDBD_HT-SELEX
0.803
0.807
FOXN2
M04836_2.00
Homo sapiens
NGCATMRBNNYKATGCH
DGCATMRNNVYKATGCN
SELEX
Yin et al.(2017)
FOXN2_eDBD_Methyl-HT-SELEX
0.910
0.977
NEMVEDRAFT_v1g67209
M01016_2.00
Nematostella vectensis
NNDWHRMNNN
NNNKYDWHNN
PBM
Nakagawa et al.(2013)
FoxN2-3_Nvec
0.784
0.721
FOXN3
M01227_2.00
Homo sapiens
GTAAACAA
TTGTTTAC
PBM
Lambert et al.(2019)
pTH11266
0.723
0.744
CHES-1-like
M01013_2.00
Drosophila melanogaster
NNNHHRMNNN
NNNKYDDNNN
PBM
Nakagawa et al.(2013)
CHES-1-like
0.690
0.686
CHES-1-like
M03745_2.00
Drosophila melanogaster
DHRTAAACAAW
WTTGTTTAYDH
SELEX
Nitta et al.(2015)
CHES-1-like_1
0.690
0.686
CHES-1-like
M03746_2.00
Drosophila melanogaster
GCGTCNNYRTAAACAAW
WTTGTTTAYRNNGACGC
SELEX
Nitta et al.(2015)
CHES-1-like_2
0.690
0.686
CHES-1-like
M03747_2.00
Drosophila melanogaster
WNVGCGTCHWNGACGCNNW
WNNGCGTCNWDGACGCBNW
SELEX
Nitta et al.(2015)
CHES-1-like_3
0.690
0.686
CHES-1-like
M03748_2.00
Drosophila melanogaster
DNGCGTCHNNDGACGCNN
NNGCGTCHNNDGACGCNH
SELEX
Nitta et al.(2015)
CHES-1-like_4
0.690
0.686
CHES-1-like
M03749_2.00
Drosophila melanogaster
HNGCGTCHNGACGCNN
NNGCGTCNDGACGCND
SELEX
Nitta et al.(2015)
CHES-1-like_5
0.690
0.686
TriadG17577
M01018_2.00
Trichoplax adhaerens
NNNHHDNNNN
NNNNHDDNNN
PBM
Nakagawa et al.(2013)
FoxN2_3
0.673
0.733
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000107857
Forkhead
112
202
KPPYSFSLLIYMAIEHSPNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPEYKPNLMQALK
ENSMUSP00000118378
Forkhead
112
201
KPPYSFSLLIYMAIEHSPNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKPFLQNLRSHSQSFIVHDSEEEN
Links
Other
Forkhead
family TFs
Other
Mus musculus
TFs
191 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
FOXN2
Sus scrofa
ENSSSCG00000029593
I
0.910
ENSSTOG00000000862
Ictidomys tridecemlineatus
ENSSTOG00000000862
I
0.910
FOXN2
Loxodonta africana
ENSLAFG00000012466
I
0.910
ENSSHAG00000001461
Sarcophilus harrisii
ENSSHAG00000001461
I
0.910
ENSMEUG00000000214
Macropus eugenii
ENSMEUG00000000214
I
0.910
FOXN2
Gorilla gorilla
ENSGGOG00000008171
I
0.910
FOXN2
Homo sapiens
ENSG00000170802
D
0.910
FOXN2
Vicugna pacos
ENSVPAG00000009218
I
0.910
ENSCSAG00000013601
Chlorocebus sabaeus
ENSCSAG00000013601
I
0.910
FOXN2
Dasypus novemcinctus
ENSDNOG00000035609
I
0.910
FOXN2
Erinaceus europaeus
ENSEEUG00000015228
I
0.910
FOXN2
Echinops telfairi
ENSETEG00000007413
I
0.910
FOXN2
Sorex araneus
ENSSARG00000003696
I
0.910
Foxn2
Rattus norvegicus
ENSRNOG00000040110
I
0.910
FOXN2
Otolemur garnettii
ENSOGAG00000011745
I
0.910
ENSOARG00000004763
Ovis aries
ENSOARG00000004763
I
0.910
ENSPPYG00000012423
Pongo abelii
ENSPPYG00000012423
I
0.910
ENSPANG00000013263
Papio anubis
ENSPANG00000013263
I
0.910
FOXN2
Procavia capensis
ENSPCAG00000005254
I
0.910
ENSNLEG00000008649
Nomascus leucogenys
ENSNLEG00000008649
I
0.910
FOXN2
Pan troglodytes
ENSPTRG00000011908
I
0.910
FOXN2
Myotis lucifugus
ENSMLUG00000017567
I
0.910
FOXN2
Macaca mulatta
ENSMMUG00000020677
I
0.910
FOXN2
Monodelphis domestica
ENSMODG00000001169
I
0.910
ENSMPUG00000010993
Mustela putorius furo
ENSMPUG00000010993
I
0.910
ENSCPOG00000026162
Cavia porcellus
ENSCPOG00000026162
I
0.910
FOXN2
Felis catus
ENSFCAG00000022828
I
0.910
ENSP00000394031-D1
Bos grunniens
ENSP00000394031-D1
I
0.910
ENSP00000343633
Macaca fascicularis
ENSP00000343633
I
0.910
FOXN2
Canis familiaris
ENSCAFG00000029603
I
0.910
FOXN2
Bos taurus
ENSBTAG00000015151
I
0.910
Myotis_brandtii_FOXN2_10033482
Myotis brandtii
Myotis_brandtii_FOXN2_10033482
I
0.910
ENSAMEG00000006413
Ailuropoda melanoleuca
ENSAMEG00000006413
I
0.910
FOXN2
Callithrix jacchus
ENSCJAG00000010894
I
0.910
foxn2
Xenopus tropicalis
XB-GENE-952918
I
0.910
ENSTSYG00000014704
Tarsius syrichta
ENSTSYG00000014704
I
0.909
FOXN2
Oryctolagus cuniculus
ENSOCUG00000009784
I
0.909
FOXN2
Equus caballus
ENSECAG00000008390
I
0.909
foxn2.S
Xenopus laevis
XB-GENE-952923
I
0.906
ENSLACG00000013808
Latimeria chalumnae
ENSLACG00000013808
I
0.901
ENSLOCG00000016292
Lepisosteus oculatus
ENSLOCG00000016292
I
0.898
Foxn2
Dipodomys ordii
ENSDORG00000007020
I
0.885
FOXN2
Pteropus vampyrus
ENSPVAG00000003737
I
0.869
FOXN2
Ochotona princeps
ENSOPRG00000007661
I
0.862
ENSAPLG00000016372
Anas platyrhynchos
ENSAPLG00000016372
I
0.854
Ogr07715
Ophisaurus gracilis
Ogr07715
I
0.854
FOXN2
Anolis carolinensis
ENSACAG00000014236
I
0.854
FOXN2
Meleagris gallopavo
ENSMGAG00000005062
I
0.854
ENSFALG00000011112
Ficedula albicollis
ENSFALG00000011112
I
0.849
Pvit_15105
Pogona vitticeps
Pvit_15105
I
0.842
FOXN2
Choloepus hoffmanni
ENSCHOG00000000109
I
0.815
FOXN2
Tursiops truncatus
ENSTTRG00000003735
I
0.809
foxn2b
Gasterosteus aculeatus
ENSGACG00000005486
I
0.804
ENSONIG00000009856
Oreochromis niloticus
ENSONIG00000009856
I
0.804
CABZ01056727.1
Danio rerio
ENSDARG00000055574
I
0.800
ENSAMXG00000001149
Astyanax mexicanus
ENSAMXG00000001149
I
0.800
foxn2b
Oryzias latipes
ENSORLG00000011005
I
0.796
foxn2b
Takifugu rubripes
ENSTRUG00000013724
I
0.796
ENSGMOG00000016028
Gadus morhua
ENSGMOG00000016028
I
0.796
foxn2b
Tetraodon nigroviridis
ENSTNIG00000016601
I
0.796
foxn2b
Danio rerio
ENSDARG00000045105
I
0.793
ENSPFOG00000015286
Poecilia formosa
ENSPFOG00000015286
I
0.791
NEMVEDRAFT_v1g67209
Nematostella vectensis
NEMVEDRAFT_v1g67209
D
0.784
ches1
Takifugu rubripes
ENSTRUG00000003497
I
0.772
ches1
Oryzias latipes
ENSORLG00000010729
I
0.772
ENSONIG00000001158
Oreochromis niloticus
ENSONIG00000001158
I
0.772
ENSPFOG00000001305
Poecilia formosa
ENSPFOG00000001305
I
0.772
Sakowv30028653m.g
Saccoglossus kowalevskii
Sakowv30028653m.g
I
0.760
gw.384.13.1
Branchiostoma floridae
gw.384.13.1
I
0.759
gw.10.104.1
Branchiostoma floridae
gw.10.104.1
I
0.759
ENSGMOG00000018188
Gadus morhua
ENSGMOG00000018188
I
0.752
CGI_10011126
Crassostrea gigas
CGI_10011126
I
0.750
ENSLACG00000006234
Latimeria chalumnae
ENSLACG00000006234
I
0.748
tetur19g01540
Tetranychus urticae
tetur19g01540
I
0.747
L798_02484
Zootermopsis nevadensis
L798_02484
I
0.741
FOXN3
Otolemur garnettii
ENSOGAG00000001733
I
0.731
foxn3
Danio rerio
ENSDARG00000012833
I
0.731
Ogr01321
Ophisaurus gracilis
Ogr01321
I
0.731
ENSAMXG00000018596
Astyanax mexicanus
ENSAMXG00000018596
I
0.731
FOXN2
Gallus gallus
ENSGALG00000008942
I
0.730
ches1
Danio rerio
ENSDARG00000043553
I
0.727
ENSGMOG00000003346
Gadus morhua
ENSGMOG00000003346
I
0.726
CapteG102038
Capitella teleta
CapteG102038
I
0.725
ENSP00000261302
Macaca fascicularis
ENSP00000261302
I
0.723
ENSSTOG00000014643
Ictidomys tridecemlineatus
ENSSTOG00000014643
I
0.723
FOXN3
Tupaia belangeri
ENSTBEG00000003603
I
0.723
ENSTGUG00000012441
Taeniopygia guttata
ENSTGUG00000012441
I
0.723
FOXN3
Sus scrofa
ENSSSCG00000002429
I
0.723
ENSPSIG00000013517
Pelodiscus sinensis
ENSPSIG00000013517
I
0.723
FOXN3
Pan troglodytes
ENSPTRG00000006614
I
0.723
FOXN3
Tursiops truncatus
ENSTTRG00000000817
I
0.723
ENSSHAG00000010850
Sarcophilus harrisii
ENSSHAG00000010850
I
0.723
Foxn3
Rattus norvegicus
ENSRNOG00000004709
I
0.723
foxn3
Xenopus tropicalis
XB-GENE-483117
I
0.723
FOXN3
Procavia capensis
ENSPCAG00000013761
I
0.723
ENSFALG00000012332
Ficedula albicollis
ENSFALG00000012332
I
0.723
ENSEEUG00000008958
Erinaceus europaeus
ENSEEUG00000008958
I
0.723
FOXN3
Felis catus
ENSFCAG00000012929
I
0.723
FOXN3
Homo sapiens
ENSG00000053254
D
0.723
FOXN3
Gorilla gorilla
ENSGGOG00000023852
I
0.723
FOXN3
Gallus gallus
ENSGALG00000010665
I
0.723
FOXN3
Dasypus novemcinctus
ENSDNOG00000003188
I
0.723
FOXN3
Cavia porcellus
ENSCPOG00000004079
I
0.723
ENSAMEG00000001627
Ailuropoda melanoleuca
ENSAMEG00000001627
I
0.723
FOXN3
Anolis carolinensis
ENSACAG00000012791
I
0.723
ENSAMXG00000009484
Astyanax mexicanus
ENSAMXG00000009484
I
0.723
ENSAPLG00000009060
Anas platyrhynchos
ENSAPLG00000009060
I
0.723
FOXN3
Canis familiaris
ENSCAFG00000011068
I
0.723
ENSLACG00000015298
Latimeria chalumnae
ENSLACG00000015298
I
0.723
FOXN3
Callithrix jacchus
ENSCJAG00000017620
I
0.723
FOXN3
Oryctolagus cuniculus
ENSOCUG00000004392
I
0.723
ENSMPUG00000008174
Mustela putorius furo
ENSMPUG00000008174
I
0.723
Foxn3
Mus musculus
ENSMUSG00000033713
I
0.723
FOXN3
Loxodonta africana
ENSLAFG00000016005
I
0.723
ENSNLEG00000016989
Nomascus leucogenys
ENSNLEG00000016989
I
0.723
FOXN3
Myotis lucifugus
ENSMLUG00000008780
I
0.723
FOXN3
Macaca mulatta
ENSMMUG00000019898
I
0.723
ENSPANG00000016397
Papio anubis
ENSPANG00000016397
I
0.723
FOXN3
Meleagris gallopavo
ENSMGAG00000013026
I
0.723
FOXN3
Ochotona princeps
ENSOPRG00000002931
I
0.723
ENSLOCG00000000880
Lepisosteus oculatus
ENSLOCG00000000880
I
0.722
ENSAMXG00000011599
Astyanax mexicanus
ENSAMXG00000011599
I
0.722
GB45298
Apis mellifera
GB45298
I
0.717
Cflo_06973--XP_625198.2_APIME
Camponotus floridanus
Cflo_06973--XP_625198.2_APIME
I
0.717
Hsal_12079--XP_625198.2_APIME
Harpegnathos saltator
Hsal_12079--XP_625198.2_APIME
I
0.717
NV15444
Nasonia vitripennis
NV15444
I
0.717
YQE_03399
Dendroctonus ponderosae
YQE_03399
I
0.716
YQE_02630
Dendroctonus ponderosae
YQE_02630
I
0.716
YQE_02614
Dendroctonus ponderosae
YQE_02614
I
0.716
BGLB008394
Biomphalaria glabrata
BGLB008394
I
0.712
Ocbimv22027168m.g
Octopus bimaculoides
Ocbimv22027168m.g
I
0.710
ACYPI005943
Acyrthosiphon pisum
ACYPI005943
I
0.710
SINV12530
Solenopsis invicta
SINV12530
I
0.709
ENSDORG00000007387
Dipodomys ordii
ENSDORG00000007387
I
0.707
FOXN3
Equus caballus
ENSECAG00000026917
I
0.707
ENSLOCG00000008977
Lepisosteus oculatus
ENSLOCG00000008977
I
0.707
HMEL010214
Heliconius melpomene
HMEL010214
I
0.702
KGM_12006
Danaus plexippus
KGM_12006
I
0.702
AFAF006655
Anopheles farauti
AFAF006655
I
0.701
AQUA002332
Anopheles quadriannulatus
AQUA002332
I
0.700
ASIS003979
Anopheles sinensis
ASIS003979
I
0.700
AMEC021917
Anopheles melas
AMEC021917
I
0.700
AMAM012648
Anopheles maculatus
AMAM012648
I
0.700
AFUN001697
Anopheles funestus
AFUN001697
I
0.700
ACUA012004
Anopheles culicifacies
ACUA012004
I
0.700
AGAP013178
Anopheles gambiae
AGAP013178
I
0.700
AARA006907
Anopheles arabiensis
AARA006907
I
0.700
AATE000717
Anopheles atroparvus
AATE000717
I
0.700
CPIJ002020
Culex quinquefasciatus
CPIJ002020
I
0.700
AMIN003345
Anopheles minimus
AMIN003345
I
0.700
AAEL008832
Aedes aegypti
AAEL008832
I
0.700
ASTEI05563
Anopheles stephensi
ASTEI05563
I
0.700
si:ch211-145o7.3
Danio rerio
ENSDARG00000061548
I
0.700
CpipJ_CPIJ002020
Culex pipiens
CpipJ_CPIJ002020
I
0.700
LLOJ006903
Lutzomyia longipalpis
LLOJ006903
I
0.700
ENSPSIG00000016369
Pelodiscus sinensis
ENSPSIG00000016369
I
0.699
Cmyd_10013867
Chelonia mydas
Cmyd_10013867
I
0.699
AALB008878
Anopheles albimanus
AALB008878
I
0.696
ADAC006994
Anopheles darlingi
ADAC006994
I
0.696
ENSAMXG00000008216
Astyanax mexicanus
ENSAMXG00000008216
I
0.695
LCUP017282
Lucilia cuprina
LCUP017282
I
0.695
MDOA011809
Musca domestica
MDOA011809
I
0.695
ENSPFOG00000021830
Poecilia formosa
ENSPFOG00000021830
I
0.692
ENSXMAG00000013148
Xiphophorus maculatus
ENSXMAG00000013148
I
0.692
GI14920
Drosophila mojavensis
FBgn0137671
I
0.690
GE17515
Drosophila yakuba
FBgn0234975
I
0.690
GL14605
Drosophila persimilis
FBgn0152210
I
0.690
GM17463
Drosophila sechellia
FBgn0172373
I
0.690
GA27773
Drosophila pseudoobscura
FBgn0249137
I
0.690
GK19775
Drosophila willistoni
FBgn0221773
I
0.690
GJ18953
Drosophila virilis
FBgn0206099
I
0.690
GF21122
Drosophila ananassae
FBgn0098127
I
0.690
GH12836
Drosophila grimshawi
FBgn0120315
I
0.690
GG17614
Drosophila erecta
FBgn0109837
I
0.690
CHES-1-like
Drosophila melanogaster
FBgn0029504
D
0.690
LotgiG138633
Lottia gigantea
LotgiG138633
I
0.687
ENSGACG00000017049
Gasterosteus aculeatus
ENSGACG00000017049
I
0.686
foxn3.S
Xenopus laevis
XB-GENE-864945
I
0.685
TC030764
Tribolium castaneum
TC030764
I
0.685
foxn3.L
Xenopus laevis
XB-GENE-6448222
I
0.685
ADIR002427
Anopheles dirus
ADIR002427
I
0.684
Myotis_brandtii_FOXN3_10022354
Myotis brandtii
Myotis_brandtii_FOXN3_10022354
I
0.682
ENSXMAG00000001667
Xiphophorus maculatus
ENSXMAG00000001667
I
0.682
PHUM603440
Pediculus humanus
PHUM603440
I
0.680
DAPPUDRAFT_8207
Daphnia pulex
DAPPUDRAFT_8207
I
0.676
ENSBTAG00000046684
Bos taurus
ENSBTAG00000046684
I
0.675
ENSTNIG00000009703
Tetraodon nigroviridis
ENSTNIG00000009703
I
0.675
ENSTNIG00000002057
Tetraodon nigroviridis
ENSTNIG00000002057
I
0.673
TriadG17577
Trichoplax adhaerens
TriadG17577
D
0.673
AMEM007698
Anopheles merus
AMEM007698
I
0.664