Foxe3 (Rattus norvegicus)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00250 (Forkhead) IPR001766 ENSRNOG00000007770 T186974_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
transcription factor responsible for tissue specific gene regulation and development [RGD, Feb 2006]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gm5294
M01984_2.00
Mus musculus
NNKRTAAACANN

NNTGTTTAYMNN
PBM
Weirauch et al.(2014)
pTH3802
0.694 0.581
FOXE1
M04845_2.00
Homo sapiens
BVYTAWRYAAACADN

NHTGTTTRYWTARBV
SELEX
Yin et al.(2017)
FOXE1_eDBD_HT-SELEX
0.690 0.814
FOXE1
M04846_2.00
Homo sapiens
BVYTAARYAAACAWH

DWTGTTTRYTTARBV
SELEX
Yin et al.(2017)
FOXE1_eDBD_Methyl-HT-SELEX
0.690 0.814
FOXD2
M03042_2.00
Homo sapiens
NRTMAAYRTTWDYN

NRHWAAYRTTKAYN
SELEX
Jolma et al.(2013)
FOXD2_1
0.689 0.721
FOXD2
M03043_2.00
Homo sapiens
RTAAAYA

TRTTTAY
SELEX
Jolma et al.(2013)
FOXD2_2
0.689 0.721
FOXD2
M04851_2.00
Homo sapiens
HWASAATAAYAWWN

NWWTRTTATTSTWD
SELEX
Yin et al.(2017)
FOXD2_eDBD_HT-SELEX_1
0.689 0.721
FOXD2
M04852_2.00
Homo sapiens
VYWANRTAAAYAH

DTRTTTAYNTWRB
SELEX
Yin et al.(2017)
FOXD2_eDBD_HT-SELEX_2
0.689 0.721
FOXD1
M02681_2.00
Homo sapiens
GTAAACAD

HTGTTTAC
SELEX
Mathelier et al.(2014)
MA0031.1
0.689 0.721
Foxd1
M10570_2.00
Mus musculus
SYWAWGTAAACADHVN

NBDHTGTTTACWTWRS
Transfac
Matys et al.(2006)
V$FREAC4_01
0.689 0.721
FOXD1
M10567_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FREAC4_02
0.689 0.721
FOXD2
M04853_2.00
Homo sapiens
HWACAATAACRWWN

NWWYGTTATTGTWD
SELEX
Yin et al.(2017)
FOXD2_eDBD_Methyl-HT-SELEX_1
0.689 0.721
FOXD2
M04854_2.00
Homo sapiens
RYTRNGTMAACRD

HYGTTKACNYARY
SELEX
Yin et al.(2017)
FOXD2_eDBD_Methyl-HT-SELEX_2
0.689 0.721
FOXL1
M03034_2.00
Homo sapiens
RTAAACA

TGTTTAY
SELEX
Jolma et al.(2013)
FOXL1_1
0.687 0.709
FOXL1
M03035_2.00
Homo sapiens
NRTAAAYAAAYAN

NTRTTTRTTTAYN
SELEX
Jolma et al.(2013)
FOXL1_2
0.687 0.709
FOXL1
M10558_2.00
Homo sapiens
DHNVHATAAAYAHNNN

NNNDTRTTTATDBNDH
Transfac
Matys et al.(2006)
V$FREAC7_01
0.687 0.709
Foxl1
M00164_2.00
Mus musculus
NNNRTMAAYA

TRTTKAYNNN
PBM
Badis et al.(2009)
Foxl1_2809
0.687 0.698
fd64A
M06197_2.00
Drosophila melanogaster
KVWAAACA

TGTTTWBM
B1H
Zhu et al.(2011)
fd64A_SANGER_5_FBgn0004895
0.685 0.628
FOXD4L4
M10564_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXD4L4_01
0.681 0.698
foxe3
M01228_2.00
Xenopus tropicalis
WNNVHHMAYW

WRTKDDBNNW
PBM
Lambert et al.(2019)
pTH9824
0.676 0.802
FOXF2
M02680_2.00
Homo sapiens
BNHNSRTAAACAHN

NDTGTTTAYSNDNV
SELEX
Mathelier et al.(2014)
MA0030.1
0.673 0.581
FOXF2
M10548_2.00
Homo sapiens
BNHNBRTAAACAHNVN

NBNDTGTTTAYVNDNV
Transfac
Matys et al.(2006)
V$FREAC2_01
0.673 0.581
fd59A
M03739_2.00
Drosophila melanogaster
HWAWRTAAACAWW

WWTGTTTAYWTWD
SELEX
Nitta et al.(2015)
fd59A_1
0.666 0.698
fd59A
M03740_2.00
Drosophila melanogaster
WWAVAATAACAHN

NDTGTTATTBTWW
SELEX
Nitta et al.(2015)
fd59A_2
0.666 0.698
fd59A
M03741_2.00
Drosophila melanogaster
YWRWRTAAAYAHH

DDTRTTTAYWYWR
SELEX
Nitta et al.(2015)
fd59A_3
0.666 0.698
fd59A
M03742_2.00
Drosophila melanogaster
MWACAAYAAYAHW

WDTRTTRTTGTWK
SELEX
Nitta et al.(2015)
fd59A_4
0.666 0.698
FOXD3
M03044_2.00
Homo sapiens
NRTMAAYRTTWDYN

NRHWAAYRTTKAYN
SELEX
Jolma et al.(2013)
FOXD3_1
0.666 0.698
FOXD3
M03045_2.00
Homo sapiens
RTAAAYA

TRTTTAY
SELEX
Jolma et al.(2013)
FOXD3_2
0.666 0.698
FOXD3
M04855_2.00
Homo sapiens
VHWRHRTAMACW

WGTKTAYDYWDB
SELEX
Yin et al.(2017)
FOXD3_eDBD_HT-SELEX
0.666 0.698
Foxd3
M09114_2.00
Mus musculus
DVNWRDRNAAACAVN

NBTGTTTNYHYWNBH
Misc
Kulakovskiy et al.(2013)
FOXD3_MOUSE.H11MO.0.C
0.666 0.698
FOXD3
M10565_2.00
Homo sapiens
RADHAAAYAWWH

DWWTRTTTDHTY
Transfac
Matys et al.(2006)
V$FOXD3_01
0.666 0.698
FOXD3
M10566_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HFH2_Q5
0.666 0.698
FOXD3
M04856_2.00
Homo sapiens
VYWRHRTAAACW

WGTTTAYDYWRB
SELEX
Yin et al.(2017)
FOXD3_eDBD_Methyl-HT-SELEX
0.666 0.698
FOXF1
M10529_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FKHL5_Q3
0.665 0.593
FOXF1
M10530_2.00
Homo sapiens
YRHATAAACAHNB

VNDTGTTTATDYR
Transfac
Matys et al.(2006)
V$HFH8_01
0.665 0.593
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000010208 Forkhead 64 153

Links

Other Forkhead family TFs
Other Rattus norvegicus TFs

557 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_23096 Aegilops tauschii F775_23096 I 0.000
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.000
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.000
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.000
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.000
BIM1 Arabidopsis thaliana AT5G08130 D 0.000
BIM2 Arabidopsis thaliana AT1G69010 D 0.000
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.000
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.000
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.000
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.000
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.000
Bo6g108530 Brassica oleracea Bo6g108530 I 0.000
Bo5g020460 Brassica oleracea Bo5g020460 I 0.000
Bo3g004690 Brassica oleracea Bo3g004690 I 0.000
Bo2g161110 Brassica oleracea Bo2g161110 I 0.000
Bo2g062560 Brassica oleracea Bo2g062560 I 0.000
Bo9g174770 Brassica oleracea Bo9g174770 I 0.000
Bra029354 Brassica rapa Bra029354 I 0.000
Bra038332 Brassica rapa Bra038332 I 0.000
Bra004355 Brassica rapa Bra004355 I 0.000
Bra005969 Brassica rapa Bra005969 I 0.000
Bra009322 Brassica rapa Bra009322 I 0.000
PK01364.1 Cannabis sativa PK01364.1 I 0.000
PK00238.1 Cannabis sativa PK00238.1 I 0.000
PK10562.1 Cannabis sativa PK10562.1 I 0.000
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.000
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.000
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.000
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.000
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.000
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.000
Ca_22043 Cicer arietinum Ca_22043 I 0.000
Cla018818 Citrullus lanatus Cla018818 I 0.000
Cla022382 Citrullus lanatus Cla022382 I 0.000
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.000
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.000
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.000
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.000
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.000
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.000
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.000
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.000
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.000
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.000
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.000
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.000
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.000
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.000
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.000
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.000
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.000
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.000
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.000
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.000
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.000
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.000
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.000
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.000
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.000
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.000
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.000
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.000
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.000
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.000
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.000
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.000
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.000
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.000
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.000
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.000
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.000
MDP0000261293 Malus domestica MDP0000261293 I 0.000
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.000
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.000
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.000
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.000
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.000
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.000
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.000
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.000
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.000
mgf011829m Mimulus guttatus mgf011829m I 0.000
mgf013208m Mimulus guttatus mgf013208m I 0.000
mgf001137m Mimulus guttatus mgf001137m I 0.000
mgf005849m Mimulus guttatus mgf005849m I 0.000
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.000
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.000
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.000
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.000
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.000
OBART09G13850 Oryza barthii OBART09G13850 I 0.000
OB08G25940 Oryza brachyantha OB08G25940 I 0.000
OB02G38020 Oryza brachyantha OB02G38020 I 0.000
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.000
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.000
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.000
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.000
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.000
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.000
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.000
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.000
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.000
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.000
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.000
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.000
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.000
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.000
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.000
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.000
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.000
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.000
OS02G0726700 Oryza sativa OS02G0726700 I 0.000
OS08G0490000 Oryza sativa OS08G0490000 I 0.000
OS09G0475400 Oryza sativa OS09G0475400 I 0.000
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.000
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.000
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.000
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.000
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.000
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.000
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.000
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.000
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.000
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.000
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.000
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.000
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.000
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.000
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.000
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.000
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.000
29790.m000843 Ricinus communis 29790.m000843 I 0.000
30138.m003899 Ricinus communis 30138.m003899 I 0.000
30138.m003913 Ricinus communis 30138.m003913 I 0.000
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.000
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.000
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.000
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.000
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.000
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.000
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.000
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.000
Si029604m.g Setaria italica Si029604m.g I 0.000
Si016505m.g Setaria italica Si016505m.g I 0.000
Si013622m.g Setaria italica Si013622m.g I 0.000
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.000
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.000
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.000
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.000
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.000
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.000
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.000
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.000
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.000
TCM_019015 Theobroma cacao TCM_019015 I 0.000
TCM_014392 Theobroma cacao TCM_014392 I 0.000
TCM_011433 Theobroma cacao TCM_011433 I 0.000
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.000
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.000
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.000
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.000
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.000
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.000
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.000
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.000
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.000
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.000
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.000